SMTL ID : 2wvs.1 (3 other biounits)

Crystal structure of an alpha-L-fucosidase GH29 trapped covalent intermediate from Bacteroides thetaiotaomicron in complex with 2- fluoro-fucosyl fluoride using an E288Q mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

1 x FUF: 2-deoxy-2-fluoro-beta-L-fucopyranose(Post Translational Modification)

FUF.1: 12 residues within 4Å: Chain A: H.36, E.57, W.58, H.105, H.106, Y.148, W.197, D.199, W.202, R.232, Q.258, W.286 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.197, A:W.286 Hydrogen bonds: A:W.58, A:H.105, A:Y.148, A:R.232, A:Q.258

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: W.202, R.232, R.241, H.242 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.232 Salt bridges: A:R.232, A:R.241, A:H.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lammerts Van Bueren, A. et al., Analysis of the Reaction Coordinate of Alpha-L-Fucosidases: A Combined Structural and Quantum Mechanical Approach. J.Am.Chem.Soc. (2010)

Release Date

2010-02-02

Peptides

ALPHA-L-FUCOSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

ALPHA-L-FUCOSIDASE

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