- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-trimer
- Ligands
- 1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 14 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 9 residues within 4Å:- Chain A: G.278, G.279, T.280, Q.283, R.608, L.658, K.660, N.679, A.680
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.280, A:Q.283, A:Q.283, A:R.608, A:N.679
- Water bridges: A:R.608
GOL.5: 7 residues within 4Å:- Chain A: P.13, N.27, Y.29, Y.292, R.293, L.296, F.297
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:P.13, A:Y.29, A:R.293
- Water bridges: A:R.293
GOL.6: 8 residues within 4Å:- Chain A: G.49, S.50, G.51, W.52, P.72, W.73, N.75
- Chain B: E.541
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:G.51, A:W.52, A:N.75, B:E.541
- Water bridges: A:P.72, B:E.541
GOL.7: 7 residues within 4Å:- Chain A: H.25, P.70, S.71, D.333, W.370, Q.630
- Ligands: GOL.8
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.25
- Water bridges: A:G.629, A:Q.630, A:Q.630
GOL.8: 8 residues within 4Å:- Chain A: P.70, F.297, D.328, N.329, G.330, T.334, W.370
- Ligands: GOL.7
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.328, A:G.330, A:G.330
GOL.9: 3 residues within 4Å:- Chain A: R.163, S.189, R.232
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.163, A:R.232, A:R.232
GOL.10: 4 residues within 4Å:- Chain A: H.375, R.376, G.377, I.419
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:H.375, A:R.376, A:G.377
- Water bridges: A:G.175, A:R.376, A:R.376, A:R.376
GOL.12: 7 residues within 4Å:- Chain B: G.278, G.279, Q.283, R.608, L.658, K.660, A.680
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:T.280, B:Q.283, B:Q.283, B:R.608, B:K.660, B:K.660
- Water bridges: B:R.608
GOL.13: 5 residues within 4Å:- Chain B: R.163, E.187, F.188, S.189, R.232
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.163, B:R.163, B:E.187, B:R.232, B:R.232
GOL.14: 4 residues within 4Å:- Chain B: A.581, H.582, C.623, G.624
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.582
GOL.15: 7 residues within 4Å:- Chain B: V.34, P.35, W.36, S.128, Q.266, Y.270, E.300
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.128, B:E.300
- Water bridges: B:S.128, B:R.352
GOL.18: 9 residues within 4Å:- Chain C: G.278, G.279, Q.283, R.608, L.658, K.660, N.679, A.680, A.681
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:T.280, C:Q.283, C:Q.283, C:R.608, C:N.679
- Water bridges: C:R.608
GOL.19: 4 residues within 4Å:- Chain C: S.71, W.73, I.74, M.379
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.71, C:S.71
GOL.20: 5 residues within 4Å:- Chain C: T.334, V.338, N.628, G.629, Q.630
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.628
- Water bridges: C:D.333
- 1 x SWA: 1S-8AB-OCTAHYDRO-INDOLIZIDINE-1A,2A,8B-TRIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhu, Y. et al., Mechanistic Insights Into a Ca2+-Dependent Family of A-Mannosidases in a Human Gut Symbiont. Nat.Chem.Biol. (2010)
- Release Date
- 2009-12-29
- Peptides
- ALPHA-1,2-MANNOSIDASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-trimer
- Ligands
- 1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 14 x GOL: GLYCEROL(Non-functional Binders)
- 1 x SWA: 1S-8AB-OCTAHYDRO-INDOLIZIDINE-1A,2A,8B-TRIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhu, Y. et al., Mechanistic Insights Into a Ca2+-Dependent Family of A-Mannosidases in a Human Gut Symbiont. Nat.Chem.Biol. (2010)
- Release Date
- 2009-12-29
- Peptides
- ALPHA-1,2-MANNOSIDASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C