SMTL ID : 2wwj.1 (1 other biounit)

STRUCTURE OF JMJD2A COMPLEXED WITH INHIBITOR 10A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.182, E.184, H.270 Ligands: Y28.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.182, A:E.184, A:H.270, H2O.2

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.228, H.234, C.300, S.301, C.302 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.228, A:H.234, A:C.300, A:C.302

1 x Y28: O-benzyl-N-(carboxycarbonyl)-D-tyrosine(Non-covalent)

Y28.3: 18 residues within 4Å: Chain A: I.65, Q.78, N.80, Y.126, Y.171, S.178, F.179, A.180, H.182, E.184, S.190, N.192, K.200, W.202, K.235, H.270, S.282 Ligands: NI.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.65, A:Y.126, A:F.179, A:K.235, A:K.235 Hydrogen bonds: A:A.180, A:S.190, A:N.192, A:S.282 Salt bridges: A:K.200, A:H.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rose, N.R. et al., Selective inhibitors of the JMJD2 histone demethylases: combined nondenaturing mass spectrometric screening and crystallographic approaches. J. Med. Chem. (2010)

Release Date

2010-03-09

Peptides

LYSINE-SPECIFIC DEMETHYLASE 4A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LYSINE-SPECIFIC DEMETHYLASE 4A

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