SMTL ID : 2wwn.1

Yersinia pseudotuberculosis Superoxide Dismutase C with bound Azide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.62, H.64, H.87, H.143 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.62, A:H.64, A:H.87, A:H.143 ZN.2: 4 residues within 4Å: Chain A: H.87, H.96, H.105, D.108 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.87, A:H.96, A:H.105, A:D.108 ZN.3: 2 residues within 4Å: Chain A: E.134, H.138 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.138, H2O.3, H2O.3, H2O.3 ZN.4: 1 residues within 4Å: Chain A: H.152 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.152 ZN.5: 2 residues within 4Å: Chain A: N.12, D.13 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.13, H2O.3 ZN.7: 4 residues within 4Å: Chain B: H.62, H.64, H.87, H.143 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.62, B:H.64, B:H.87, B:H.143 ZN.8: 4 residues within 4Å: Chain B: H.87, H.96, H.105, D.108 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.87, B:H.96, B:H.105, B:D.108

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 7 residues within 4Å: Chain A: D.147, N.148, Y.149 Chain B: H.50, T.121, P.123 Ligands: AZI.9 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.50

2 x AZI: AZIDE ION(Non-covalent)

AZI.9: 2 residues within 4Å: Chain B: T.39 Ligands: MES.6 2 PLIP interactions: 2 interactions with chain B Water bridges: B:T.37, B:T.48 AZI.10: 1 residues within 4Å: Chain B: L.54 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huyet, J. et al., Crystal Structure of the Yersinia Pseudotuberculosis Superoxide Dismutase (Sodc). To be Published

Release Date

2010-11-03

Peptides

SUPEROXIDE DISMUTASE [CU-ZN]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SUPEROXIDE DISMUTASE [CU-ZN]

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