SMTL ID : 2www.1 (1 other biounit)

Crystal Structure of Methylmalonic Acidemia Type A Protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

homo-dimer

Ligands

2 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.1: 9 residues within 4Å: Chain A: P.72, L.73, A.74, F.75, R.101, G.102, H.103, D.168, Q.277 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.72 Hydrogen bonds: A:G.102, A:Q.277 2PE.3: 9 residues within 4Å: Chain B: K.71, P.72, L.73, F.75, R.101, G.102, H.103, D.168, Q.277 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.75

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 13 residues within 4Å: Chain A: P.82, P.83, G.84, A.85, G.86, K.87, S.88, T.89, K.221, D.223, S.259, A.260, R.261 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.84, A:A.85, A:G.86, A:K.87, A:S.88, A:S.88, A:S.88, A:T.89, A:T.89, A:K.221, A:A.260, A:R.261, A:R.261 Water bridges: A:K.221 Salt bridges: A:K.87, A:D.223 pi-Cation interactions: A:R.261 GDP.4: 13 residues within 4Å: Chain B: P.82, P.83, G.84, A.85, G.86, K.87, S.88, T.89, K.221, D.223, S.259, A.260, R.261 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:P.82, B:G.84, B:A.85, B:G.86, B:K.87, B:S.88, B:S.88, B:S.88, B:T.89, B:T.89, B:K.221, B:K.221, B:A.260, B:R.261, B:R.261 Salt bridges: B:K.87, B:D.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Froese, D.S. et al., Structures of the Human Gtpase Mmaa and Vitamin B12-Dependent Methylmalonyl-Coa Mutase and Insight Into Their Complex Formation. J.Biol.Chem. (2010)

Release Date

2009-11-17

Peptides

METHYLMALONIC ACIDURIA TYPE A PROTEIN, MITOCHONDRIAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

METHYLMALONIC ACIDURIA TYPE A PROTEIN, MITOCHONDRIAL

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