SMTL ID : 2wxt.1

Clostridium perfringens alpha-toxin strain NCTC8237

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: W.1, H.11, H.126, D.130 Ligands: CD.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:W.1, A:H.11, A:D.130, H2O.10

8 x CD: CADMIUM ION(Non-covalent)

CD.2: 2 residues within 4Å: Chain A: H.46, E.47 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.46, A:E.47, A:E.47 CD.3: 5 residues within 4Å: Chain A: D.56, H.68, H.126, D.130 Ligands: ZN.1 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.56, A:H.68, A:H.126, A:D.130, H2O.3, H2O.10 CD.4: 3 residues within 4Å: Chain A: H.136, H.148, E.152 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.136, A:H.148, A:E.152, A:E.152 CD.5: 1 residues within 4Å: Chain A: E.157 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.157, A:E.157, H2O.5 CD.6: 2 residues within 4Å: Chain A: G.168, C.169 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.168, A:C.169, H2O.5 CD.7: 2 residues within 4Å: Chain A: C.169, E.173 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.169, A:E.173, A:E.173, H2O.5 CD.8: 1 residues within 4Å: Chain A: E.173 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.173 CD.9: 2 residues within 4Å: Chain A: H.241, E.245 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.241, A:E.245, A:E.245

2 x CA: CALCIUM ION(Non-covalent)

CA.10: 2 residues within 4Å: Chain A: D.273, N.297 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.273, H2O.8 CA.11: 2 residues within 4Å: Chain A: D.293, N.294 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.293, A:D.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vachieri, S.G. et al., Comparison of a Nontoxic Variant of Clostridium Perfringens [Alpha]-Toxin with the Toxic Wild-Type Strain. Acta Crystallogr.,Sect.D (2010)

Release Date

2009-11-17

Peptides

PHOSPHOLIPASE C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHOSPHOLIPASE C

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