SMTL ID : 2wyk.1

SiaP in complex with Neu5Gc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x NGE: N-glycolyl-beta-neuraminic acid(Non-covalent)

NGE.1: 13 residues within 4Å: Chain A: N.10, D.49, F.65, A.66, E.67, R.70, R.127, R.147, P.149, A.151, F.170, N.187, Q.214 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:F.170 Hydrogen bonds: A:N.10, A:F.65, A:E.67, A:E.67, A:R.70, A:R.70, A:R.70, A:R.127, A:R.127, A:N.187, A:Q.214 Water bridges: A:N.10, A:N.10, A:A.11, A:E.17, A:E.67, A:E.67, A:E.67, A:E.67, A:N.124, A:N.154, A:N.212 Salt bridges: A:R.127, A:R.147

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.2: 3 residues within 4Å: Chain A: N.220, Y.223, K.224 No protein-ligand interaction detected (PLIP) SCN.3: 3 residues within 4Å: Chain A: D.255, F.259, K.262 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Darby, J.F. et al., Water networks can determine the affinity of ligand binding to proteins. J.Am.Chem.Soc. (2019)

Release Date

2011-01-26

Peptides

SIALIC ACID-BINDING PERIPLASMIC PROTEIN SIAP: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SIALIC ACID-BINDING PERIPLASMIC PROTEIN SIAP