SMTL ID : 2wyr.1

3-D structure of PhTET1-12s, dodecamer in the asymmetric unit

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-12-mer

Ligands

24 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: D.173, E.206, H.307 Ligands: CO.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.173, A:E.206, A:H.307, H2O.6, H2O.6 CO.2: 8 residues within 4Å: Chain A: H.62, D.173, D.174, E.205, E.206, D.228, S.229 Ligands: CO.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.62, A:D.173, A:D.228, A:D.228, H2O.6 CO.3: 4 residues within 4Å: Chain B: D.173, E.206, H.307 Ligands: CO.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.173, B:E.206, B:E.206, B:H.307, H2O.11 CO.4: 8 residues within 4Å: Chain B: H.62, D.173, D.174, E.205, E.206, D.228, S.229 Ligands: CO.3 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.62, B:D.173, B:D.228, B:D.228, H2O.11 CO.5: 4 residues within 4Å: Chain C: D.173, E.206, H.307 Ligands: CO.6 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.173, C:E.206, C:E.206, C:H.307, H2O.16 CO.6: 7 residues within 4Å: Chain C: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.5 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.62, C:D.173, C:D.228, C:D.228, H2O.16 CO.7: 4 residues within 4Å: Chain D: D.173, E.206, H.307 Ligands: CO.8 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.173, D:E.206, D:E.206, D:H.307, H2O.21 CO.8: 8 residues within 4Å: Chain D: H.62, D.173, D.174, E.205, E.206, D.228, S.229 Ligands: CO.7 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.62, D:D.173, D:D.228, D:D.228, H2O.21 CO.9: 4 residues within 4Å: Chain E: D.173, E.206, H.307 Ligands: CO.10 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.173, E:E.206, E:E.206, E:H.307 CO.10: 7 residues within 4Å: Chain E: H.62, D.173, D.174, E.205, E.206, D.228 Ligands: CO.9 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.62, E:D.173, E:D.228, E:D.228 CO.11: 4 residues within 4Å: Chain F: D.173, E.206, H.307 Ligands: CO.12 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.173, F:E.206, F:E.206, F:H.307, H2O.31 CO.12: 7 residues within 4Å: Chain F: H.62, D.173, D.174, E.205, D.228, S.229 Ligands: CO.11 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.62, F:D.173, F:D.228, F:D.228, H2O.31 CO.13: 4 residues within 4Å: Chain G: D.173, E.206, H.307 Ligands: CO.14 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:D.173, G:E.206, G:E.206, G:H.307, H2O.36 CO.14: 7 residues within 4Å: Chain G: H.62, D.173, E.205, E.206, D.228, S.229 Ligands: CO.13 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:H.62, G:D.173, G:D.228, G:D.228, H2O.36 CO.15: 4 residues within 4Å: Chain H: D.173, E.206, H.307 Ligands: CO.16 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:D.173, H:E.206, H:E.206, H:H.307, H2O.40 CO.16: 7 residues within 4Å: Chain H: H.62, D.173, E.205, E.206, D.228, S.229 Ligands: CO.15 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:H.62, H:D.173, H:D.228, H:D.228, H2O.40 CO.17: 4 residues within 4Å: Chain I: D.173, E.206, H.307 Ligands: CO.18 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:D.173, I:E.206, I:E.206, I:H.307, H2O.44 CO.18: 6 residues within 4Å: Chain I: H.62, D.173, E.205, D.228, S.229 Ligands: CO.17 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:H.62, I:D.173, I:D.228, I:D.228, H2O.44 CO.19: 4 residues within 4Å: Chain J: D.173, E.206, H.307 Ligands: CO.20 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:D.173, J:E.206, J:E.206, J:H.307, H2O.49 CO.20: 8 residues within 4Å: Chain J: H.62, D.173, D.174, E.205, E.206, D.228, S.229 Ligands: CO.19 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:H.62, J:D.173, J:D.228, J:D.228, H2O.49 CO.21: 4 residues within 4Å: Chain K: D.173, E.206, H.307 Ligands: CO.22 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:D.173, K:E.206, K:E.206, K:H.307 CO.22: 6 residues within 4Å: Chain K: H.62, D.173, D.174, E.205, D.228 Ligands: CO.21 5 PLIP interactions: 4 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:H.62, K:D.173, K:D.228, K:D.228, H2O.54 CO.23: 4 residues within 4Å: Chain L: D.173, E.206, H.307 Ligands: CO.24 5 PLIP interactions: 4 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:D.173, L:E.206, L:E.206, L:H.307, H2O.58 CO.24: 7 residues within 4Å: Chain L: H.62, D.173, E.205, E.206, D.228, S.229 Ligands: CO.23 5 PLIP interactions: 4 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:H.62, L:D.173, L:D.228, L:D.228, H2O.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dura, M.A. et al., Structure of Phtet1-12S, Dodecamer in the Asymmetric Unit. To be Published

Release Date

2010-12-01

Peptides

COBALT-ACTIVATED PEPTIDASE TET1: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

COBALT-ACTIVATED PEPTIDASE TET1

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