SMTL ID : 2wyw.1

High resolution structure of Thermus thermophilus enoyl-acyl carrier protein reductase NAD and triclosan-form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: G.15, V.16, T.17, S.21, L.22, Q.42, L.46, A.65, D.66, V.67, A.93, I.94, A.95, F.96, V.120, L.145, T.146, Y.147, K.164, A.190, G.191, P.192, V.193, T.195, V.196, A.197 Ligands: TCL.2 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:L.22, A:Y.147, A:A.190 Hydrogen bonds: A:G.15, A:T.17, A:S.21, A:L.22, A:D.66, A:V.67, A:I.94, A:A.95, A:K.164, A:V.193, A:V.193, A:A.197 Water bridges: A:V.16, A:T.17, A:T.17, A:G.23, A:Q.42, A:Q.42, A:Q.42, A:Q.42, A:R.45, A:I.94, A:V.196 NAD.3: 27 residues within 4Å: Chain B: G.15, V.16, T.17, S.21, L.22, Q.42, L.46, A.65, D.66, V.67, A.93, I.94, A.95, F.96, V.120, L.145, T.146, Y.147, K.164, A.190, G.191, P.192, V.193, T.195, V.196, A.197 Ligands: TCL.4 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:L.22, B:Y.147, B:A.190 Hydrogen bonds: B:G.15, B:T.17, B:T.17, B:S.21, B:L.22, B:D.66, B:V.67, B:I.94, B:A.95, B:K.164, B:V.193, B:V.193, B:A.197 Water bridges: B:G.23, B:Q.42, B:Q.42, B:Q.42, B:Q.42, B:Q.42, B:I.94 NAD.5: 27 residues within 4Å: Chain C: G.15, V.16, T.17, S.21, L.22, Q.42, L.46, A.65, D.66, V.67, A.93, I.94, A.95, F.96, V.120, L.145, T.146, Y.147, K.164, A.190, G.191, P.192, V.193, T.195, V.196, A.197 Ligands: TCL.6 26 PLIP interactions: 26 interactions with chain C Hydrophobic interactions: C:L.22, C:Y.147, C:A.190 Hydrogen bonds: C:G.15, C:T.17, C:S.21, C:L.22, C:D.66, C:V.67, C:I.94, C:A.95, C:K.164, C:V.193, C:V.193, C:T.195, C:A.197 Water bridges: C:T.17, C:G.23, C:Q.42, C:Q.42, C:Q.42, C:Q.42, C:Q.42, C:T.68, C:I.94, C:V.196 NAD.7: 27 residues within 4Å: Chain D: G.15, V.16, T.17, S.21, L.22, Q.42, L.46, A.65, D.66, V.67, A.93, I.94, A.95, F.96, V.120, L.145, T.146, Y.147, K.164, A.190, G.191, P.192, V.193, T.195, V.196, A.197 Ligands: TCL.8 24 PLIP interactions: 24 interactions with chain D Hydrophobic interactions: D:L.22, D:Y.147, D:A.190 Hydrogen bonds: D:G.15, D:T.17, D:L.22, D:D.66, D:V.67, D:I.94, D:A.95, D:K.164, D:V.193, D:V.193, D:T.195, D:A.197 Water bridges: D:T.17, D:G.23, D:Q.42, D:Q.42, D:Q.42, D:Q.42, D:Q.42, D:I.94, D:V.196

4 x TCL: TRICLOSAN(Non-covalent)

TCL.2: 12 residues within 4Å: Chain A: A.95, A.97, Y.147, Y.157, M.160, K.164, A.197, S.200, I.201, F.204, M.207 Ligands: NAD.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.157, A:A.197, A:I.201, A:I.201, A:F.204 Hydrogen bonds: A:Y.157, A:Y.157 Halogen bonds: A:A.97 TCL.4: 11 residues within 4Å: Chain B: A.95, A.97, Y.157, M.160, P.192, A.197, A.198, S.200, I.201, M.207 Ligands: NAD.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.157, B:A.197, B:I.201 Hydrogen bonds: B:Y.157 Halogen bonds: B:A.97 TCL.6: 12 residues within 4Å: Chain C: A.95, A.97, Y.147, Y.157, M.160, K.164, A.197, A.198, S.200, I.201, F.204 Ligands: NAD.5 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:Y.157, C:I.201, C:I.201 Hydrogen bonds: C:Y.157 Halogen bonds: C:A.97 TCL.8: 13 residues within 4Å: Chain D: A.95, A.97, M.102, Y.147, Y.157, M.160, K.164, A.197, A.198, S.200, I.201, F.204 Ligands: NAD.7 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:Y.157, D:A.197, D:A.198, D:I.201, D:I.201, D:F.204 Hydrogen bonds: D:Y.157 Halogen bonds: D:A.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Otero, J.M. et al., High-resolution structures of Thermus thermophilus enoyl-acyl carrier protein reductase in the apo form, in complex with NAD+ and in complex with NAD+ and triclosan. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. (2012)

Release Date

2010-11-24

Peptides

ENOYL-[ACYL CARRIER PROTEIN] REDUCTASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ENOYL-[ACYL CARRIER PROTEIN] REDUCTASE

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