SMTL ID : 2wz7.1 (1 other biounit)

CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF E.COLI YBGF

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

homo-trimer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: K.58, L.61 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.58, A:L.61

1 x AUC: GOLD (I) CYANIDE ION(Non-covalent)

AUC.2: 7 residues within 4Å: Chain A: Q.57, I.60 Chain B: V.53, R.56, Q.57, I.60 Chain C: Q.57 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.57, B:R.56

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: L.29, S.30, Q.33 Chain C: Q.28, D.31, N.32 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:Q.28, C:N.32 Water bridges: A:Q.33, A:Q.33

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain C: S.34, D.37, S.38 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.34, C:S.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krachler, A.M. et al., Tola Modulates the Oligomeric Status of Ybgf in the Bacterial Periplasm. J.Mol.Biol. (2010)

Release Date

2010-09-15

Peptides

UNCHARACTERIZED PROTEIN YBGF: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

UNCHARACTERIZED PROTEIN YBGF

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