SMTL ID : 2wzi.1

BtGH84 D243N in complex with 5F-oxazoline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: Q.522, M.559, F.560, D.563, V.575, K.576, K.583, D.610 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Q.522, A:V.575, A:K.583, A:D.610, A:D.610 Water bridges: A:F.560, A:F.560, A:D.563, A:D.563, A:D.610, A:Y.611 GOL.3: 4 residues within 4Å: Chain A: P.451, N.452, G.455, R.457 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.452, A:G.455, A:R.457 GOL.5: 3 residues within 4Å: Chain A: L.199, P.200, Y.201 No protein-ligand interaction detected (PLIP) GOL.6: 7 residues within 4Å: Chain B: Q.522, F.560, D.563, V.575, K.576, K.583, D.610 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.522, B:V.575, B:K.583, B:K.583 Water bridges: B:F.560, B:F.560, B:D.563 GOL.7: 4 residues within 4Å: Chain B: P.375, Y.377, W.421, E.459 3 PLIP interactions: 3 interactions with chain B Water bridges: B:T.420, B:T.420, B:W.421

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: E.53, E.82, D.85 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.53, A:E.82, A:D.85, A:D.85 CA.8: 3 residues within 4Å: Chain B: E.53, E.82, D.85 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.53, B:E.82, B:D.85, B:D.85

2 x 5FN: (3AS,5S,6S,7R,7AR)-5-FLUORO-5-(HYDROXYMETHYL)-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]OXAZOLE-6,7-DIOL(Non-covalent)

5FN.4: 16 residues within 4Å: Chain A: G.156, F.157, Y.158, K.187, D.263, N.264, C.299, Y.303, T.331, V.335, W.358, N.360, V.363, D.365, Y.366, N.393 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:D.263, A:Y.303, A:T.331, A:W.358 Hydrogen bonds: A:G.156, A:K.187, A:D.263, A:N.360, A:D.365, A:D.365, A:N.393 Water bridges: A:N.264 5FN.11: 17 residues within 4Å: Chain B: G.156, F.157, Y.158, K.187, D.263, N.264, C.299, Y.303, T.331, V.335, I.336, W.358, N.360, V.363, D.365, Y.366, N.393 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:D.263, B:Y.303, B:T.331, B:W.358 Hydrogen bonds: B:G.156, B:Y.158, B:K.187, B:N.360, B:D.365, B:D.365, B:N.393 Water bridges: B:Y.303 Halogen bonds: B:N.360

2 x NA: SODIUM ION(Non-functional Binders)

NA.9: 3 residues within 4Å: Chain B: D.189, P.190, Y.191 1 PLIP interactions: 1 interactions with chain B Water bridges: B:D.189 NA.10: 3 residues within 4Å: Chain B: E.399, P.511, E.515 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.515 Water bridges: B:A.398

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, Y. et al., Visualizing the Reaction Coordinate of an O-Glcnac Hydrolase. J.Am.Chem.Soc. (2010)

Release Date

2010-01-26

Peptides

O-GLCNACASE BT_4395: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

O-GLCNACASE BT_4395