Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 2wzw.1
Crystal structure of the FMN-dependent nitroreductase NfnB from Mycobacterium smegmatis in complex with NADPH
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
homo-dimer
Ligands
2 x
FMN
:
FLAVIN MONONUCLEOTIDE
(Non-covalent)
FMN.1:
22 residues within 4Å:
Chain A:
R.26
,
R.27
,
A.28
,
R.30
,
F.109
,
Y.130
,
Y.138
,
P.180
,
Q.181
,
A.182
,
L.183
,
I.222
,
R.224
Chain B:
P.53
,
S.54
,
N.55
,
S.56
,
N.57
,
D.159
,
I.162
Ligands:
NDP.2
,
PO4.6
22
PLIP interactions
:
19 interactions with chain A
,
3 interactions with chain B
Hydrophobic interactions:
A:P.180
,
A:A.182
,
B:I.162
Hydrogen bonds:
A:A.28
,
A:R.30
,
A:Y.138
,
A:A.182
,
A:L.183
,
B:S.54
,
B:S.56
Water bridges:
A:R.26
,
A:A.28
,
A:R.30
,
A:S.134
,
A:Y.138
,
A:Y.138
,
A:Y.138
,
A:Q.181
,
A:I.222
,
A:I.222
Salt bridges:
A:R.26
,
A:R.224
FMN.5:
21 residues within 4Å:
Chain A:
P.53
,
S.54
,
N.55
,
S.56
,
N.57
,
D.159
,
I.162
Chain B:
R.26
,
R.27
,
A.28
,
R.30
,
F.109
,
Y.130
,
Y.138
,
P.180
,
Q.181
,
A.182
,
L.183
,
I.222
,
R.224
Ligands:
PO4.3
20
PLIP interactions
:
17 interactions with chain B
,
3 interactions with chain A
Hydrophobic interactions:
B:P.180
,
A:I.162
Hydrogen bonds:
B:A.28
,
B:R.30
,
B:Y.138
,
B:A.182
,
B:L.183
,
A:S.54
,
A:S.56
Water bridges:
B:A.28
,
B:R.30
,
B:R.30
,
B:S.134
,
B:Y.138
,
B:Q.181
,
B:I.222
,
B:R.224
,
B:R.224
Salt bridges:
B:R.26
,
B:R.224
1 x
NDP
:
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
(Non-covalent)
NDP.2:
14 residues within 4Å:
Chain A:
Y.93
,
R.106
,
A.107
,
G.110
,
S.111
,
Y.114
,
I.119
,
A.120
,
R.121
,
L.183
,
F.186
Chain B:
S.56
Ligands:
FMN.1
,
PO4.6
16
PLIP interactions
:
16 interactions with chain A
Hydrophobic interactions:
A:Y.93
Hydrogen bonds:
A:R.106
,
A:I.119
,
A:N.131
Water bridges:
A:Y.93
,
A:R.106
,
A:R.106
,
A:R.121
,
A:R.121
,
A:R.121
,
A:R.121
,
A:N.131
Salt bridges:
A:R.106
,
A:R.106
pi-Stacking:
A:Y.114
,
A:F.186
3 x
PO4
:
PHOSPHATE ION
(Non-functional Binders)
PO4.3:
4 residues within 4Å:
Chain A:
N.55
,
S.56
Chain B:
F.109
Ligands:
FMN.5
2
PLIP interactions
:
2 interactions with chain A
Hydrogen bonds:
A:S.56
Water bridges:
A:S.56
PO4.4:
3 residues within 4Å:
Chain A:
H.62
,
E.64
Chain B:
R.232
4
PLIP interactions
:
3 interactions with chain A
,
1 interactions with chain B
Water bridges:
A:H.62
,
A:R.200
Salt bridges:
A:H.62
,
B:R.232
PO4.6:
5 residues within 4Å:
Chain A:
F.109
Chain B:
N.55
,
S.56
Ligands:
FMN.1
,
NDP.2
2
PLIP interactions
:
1 interactions with chain B
,
1 interactions with chain A
Hydrogen bonds:
B:S.56
Water bridges:
A:Y.93
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Manina, G. et al., Biological and Structural Characterization of the Mycobacterium Smegmatis Nitroreductase Nfnb, and its Role in Benzothiazinone Resistance. Mol.Microbiol. (2010)
Release Date
2010-07-14
Peptides
NFNB PROTEIN:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
NFNB PROTEIN
Related Entries With Identical Sequence
2wzv.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme