SMTL ID : 2x05.1 (1 other biounit)

Inhibition of the exo-beta-D-glucosaminidase CsxA by a glucosamine- configured castanospermine and an amino-australine analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x X05: AMINO-CASTANOSPERMINE(Non-covalent)

X05.1: 13 residues within 4Å: Chain A: I.202, D.203, W.204, E.394, C.419, S.468, D.469, M.512, Y.516, E.541, W.642, W.653, W.781 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.516, A:W.781 Hydrogen bonds: A:D.203, A:D.203, A:W.204, A:S.468, A:E.541 Salt bridges: A:D.203, A:D.469, A:E.541

9 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.2: 2 residues within 4Å: Chain A: N.299, H.310 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.310 CD.3: 1 residues within 4Å: Chain A: D.296 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.296, A:D.296, H2O.9 CD.4: 1 residues within 4Å: Chain A: H.178 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.178, H2O.5 CD.5: 1 residues within 4Å: Chain A: D.404 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.404, A:D.404, H2O.4, H2O.10, H2O.12 CD.6: 2 residues within 4Å: Chain A: H.244, D.246 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.244, A:D.246, A:D.246 CD.7: 4 residues within 4Å: Chain A: G.815, R.873, T.874, A.875 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:G.815 CD.8: 7 residues within 4Å: Chain A: R.87, S.88, T.89, A.92, F.368, L.369, R.370 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:R.87, A:F.368, A:L.369 CD.9: 7 residues within 4Å: Chain A: E.418, C.419, C.420, D.421, K.422, W.423, E.424 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.418, A:D.421, A:D.421 CD.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pluvinage, B. et al., Inhibition of the Exo-Beta-D-Glucosaminidase Csxa by a Glucosamine-Configured Castanospermine and an Amino-Australine Analogue. Org.Biomol.Chem. (2009)

Release Date

2009-12-15

Peptides

EXO-BETA-D-GLUCOSAMINIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EXO-BETA-D-GLUCOSAMINIDASE

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