SMTL ID : 2x0i.1

2.9 A RESOLUTION STRUCTURE OF MALATE DEHYDROGENASE FROM ARCHAEOGLOBUS FULGIDUS IN COMPLEX WITH NADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

homo-dimer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 24 residues within 4Å: Chain A: G.9, R.10, V.11, D.32, I.33, A.34, L.37, Y.64, T.76, A.77, G.78, L.79, A.80, I.97, V.117, T.118, N.119, M.121, M.142, L.146, H.172, T.212, P.216 Ligands: SO4.2 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.117, A:P.216 Hydrogen bonds: A:R.10, A:V.11, A:I.33, A:G.78, A:L.79, A:V.117, A:N.119, A:N.119 Water bridges: A:G.9, A:G.12, A:Y.64, A:A.80, A:A.80 Salt bridges: A:R.10, A:R.10 NAI.4: 24 residues within 4Å: Chain B: G.9, R.10, V.11, D.32, I.33, A.34, L.37, Y.64, T.76, A.77, G.78, L.79, A.80, I.97, V.117, T.118, N.119, M.121, M.142, L.146, H.172, T.212, P.216 Ligands: SO4.5 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:V.117, B:P.216 Hydrogen bonds: B:R.10, B:V.11, B:I.33, B:Y.64, B:G.78, B:L.79, B:V.117, B:N.119, B:N.119 Water bridges: B:G.9, B:G.12, B:Y.64, B:A.80, B:A.80 Salt bridges: B:R.10, B:R.10

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: N.119, L.146, R.150, H.172, A.202, T.212 Ligands: NAI.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.119, A:T.212 Salt bridges: A:R.150, A:H.172 SO4.5: 7 residues within 4Å: Chain B: N.119, L.146, R.150, H.172, A.202, T.212 Ligands: NAI.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.119 Salt bridges: B:R.150, B:H.172

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: G.259, G.262, E.264 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.262 NA.6: 3 residues within 4Å: Chain B: G.259, G.262, E.264 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irimia, A. et al., The 2.9A Resolution Crystal Structure of Malate Dehydrogenase from Archaeoglobus Fulgidus: Mechanisms of Oligomerisation and Thermal Stabilisation. J.Mol.Biol. (2004)

Release Date

2009-12-22

Peptides

MALATE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MALATE DEHYDROGENASE

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