SMTL ID : 2x0k.1 (2 other biounits)

CRYSTAL STRUCTURE OF MODULAR FAD SYNTHETASE FROM CORYNEBACTERIUM AMMONIAGENES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.73, L.74 Chain B: R.195, Y.279 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:L.74, B:Y.279, B:Y.279 Water bridges: A:T.216 Salt bridges: B:R.195 SO4.3: 3 residues within 4Å: Chain A: Y.279 Chain B: T.73, L.74 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.74 SO4.5: 4 residues within 4Å: Chain C: T.73, L.74 Chain D: R.195, Y.279 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:L.74, D:Y.279 Water bridges: C:T.216 Salt bridges: D:R.195 SO4.7: 3 residues within 4Å: Chain C: Y.279 Chain D: T.73, L.74 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:L.74 Water bridges: D:T.216 SO4.9: 4 residues within 4Å: Chain E: T.73, L.74 Chain F: R.195, Y.279 5 PLIP interactions: 2 interactions with chain E, 3 interactions with chain F Hydrogen bonds: E:L.74, F:Y.279, F:Y.279 Water bridges: E:T.216 Salt bridges: F:R.195 SO4.11: 3 residues within 4Å: Chain E: Y.279 Chain F: T.73, L.74 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:Y.279, F:L.74

6 x PPV: PYROPHOSPHATE(Non-covalent)

PPV.2: 8 residues within 4Å: Chain A: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:V.23, A:F.24, A:N.125, A:S.164 Water bridges: A:D.25, A:N.125, A:S.164, A:T.165, A:T.165, A:T.165 Salt bridges: A:H.28, A:H.31, A:H.31 PPV.4: 8 residues within 4Å: Chain B: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:V.23, B:F.24, B:N.125, B:N.125, B:S.164 Water bridges: B:S.163, B:S.164, B:S.164, B:T.165, B:R.168 Salt bridges: B:H.28, B:H.31, B:H.31 PPV.6: 8 residues within 4Å: Chain C: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:V.23, C:F.24, C:N.125, C:S.164 Water bridges: C:D.25, C:N.125, C:S.164, C:T.165, C:T.165, C:T.165 Salt bridges: C:H.28, C:H.31, C:H.31 PPV.8: 8 residues within 4Å: Chain D: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:V.23, D:F.24, D:N.125, D:N.125, D:S.164 Water bridges: D:S.163, D:S.164, D:S.164, D:T.165, D:R.168 Salt bridges: D:H.28, D:H.31, D:H.31 PPV.10: 8 residues within 4Å: Chain E: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:V.23, E:F.24, E:N.125, E:S.164 Water bridges: E:D.25, E:N.125, E:S.164, E:T.165, E:T.165, E:R.168 Salt bridges: E:H.28, E:H.31, E:H.31 PPV.12: 8 residues within 4Å: Chain F: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 13 PLIP interactions: 13 interactions with chain F Hydrogen bonds: F:V.23, F:F.24, F:N.125, F:N.125, F:S.164 Water bridges: F:S.163, F:S.164, F:S.164, F:T.165, F:R.168 Salt bridges: F:H.28, F:H.31, F:H.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herguedas, B. et al., Oligomeric State in the Crystal Structure of Modular Fad Synthetase Provides Insights Into its Sequential Catalysis in Prokaryotes. J.Mol.Biol. (2010)

Release Date

2010-05-26

Peptides

RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF

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