SMTL ID : 2x14.1

The catalytically active fully closed conformation of human phosphoglycerate kinase K219A mutant in complex with AMP-PCP and 3PG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: K.215, D.374 Ligands: ACP.3 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.374, H2O.8, H2O.9

1 x 3PG: 3-PHOSPHOGLYCERIC ACID(Non-covalent)

3PG.2: 12 residues within 4Å: Chain A: D.23, N.25, R.38, H.62, R.65, R.122, G.166, T.167, H.169, R.170, K.215 Ligands: ACP.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.23, A:N.25, A:R.38, A:G.166 Water bridges: A:R.65, A:R.170, A:R.170, A:K.215, A:K.215, A:G.373, A:G.395, A:G.396 Salt bridges: A:R.38, A:H.62, A:R.65, A:R.122, A:R.170, A:K.215, A:K.215

1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.3: 25 residues within 4Å: Chain A: R.38, G.213, A.214, K.215, G.237, G.238, F.241, L.256, G.312, L.313, N.336, G.337, P.338, G.340, V.341, E.343, G.371, G.372, G.373, D.374, T.375, G.395, G.396 Ligands: MG.1, 3PG.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:R.38, A:A.214, A:K.215, A:K.215, A:G.238, A:G.312, A:G.337, A:E.343, A:G.373, A:D.374, A:T.375, A:G.396 Water bridges: A:R.38, A:K.215, A:N.336, A:N.336, A:D.374, A:D.374, A:G.395 Salt bridges: A:K.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bowler, M.W. et al., The Structure of Human Phosphoglycerate Kinase in its Fully Active Conformation in Complex with Ground State Analogues. To be Published

Release Date

2010-12-29

Peptides

PHOSPHOGLYCERATE KINASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHOSPHOGLYCERATE KINASE 1