SMTL ID : 2x17.1

The X-ray structure of Ferritin from Pyrococcus furiosus loaded with Ag(I)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-24-mer

Ligands

33 x AG: SILVER ION(Non-covalent)

AG.1: 6 residues within 4Å: Chain A: E.49, H.53, W.122, E.126, E.130 Chain M: M.170 Ligand excluded by PLIP AG.2: 4 residues within 4Å: Chain B: E.49, H.53, E.126 Chain N: M.170 Ligand excluded by PLIP AG.3: 4 residues within 4Å: Chain B: M.153 Chain H: M.153 Chain M: M.153 Chain S: M.153 Ligand excluded by PLIP AG.4: 1 residues within 4Å: Chain G: M.1 Ligand excluded by PLIP AG.5: 5 residues within 4Å: Chain C: E.49, H.53, W.122, E.126 Chain O: M.170 Ligand excluded by PLIP AG.6: 4 residues within 4Å: Chain D: M.153 Chain J: M.153 Chain O: M.153 Chain U: M.153 Ligand excluded by PLIP AG.7: 5 residues within 4Å: Chain D: E.49, H.53, W.122, E.126 Chain P: M.170 Ligand excluded by PLIP AG.8: 3 residues within 4Å: Chain D: M.1, N.65 Chain W: Y.91 Ligand excluded by PLIP AG.9: 5 residues within 4Å: Chain E: E.49, H.53, W.122, E.126 Chain Q: M.170 Ligand excluded by PLIP AG.10: 4 residues within 4Å: Chain E: M.153 Chain T: M.153 Chain V: M.153 Chain X: M.153 Ligand excluded by PLIP AG.11: 6 residues within 4Å: Chain F: E.49, H.53, W.122, E.126, E.130 Chain R: M.170 Ligand excluded by PLIP AG.12: 4 residues within 4Å: Chain F: M.153 Chain N: M.153 Chain P: M.153 Chain W: M.153 Ligand excluded by PLIP AG.13: 5 residues within 4Å: Chain G: E.49, H.53, W.122, E.126 Chain S: M.170 Ligand excluded by PLIP AG.14: 4 residues within 4Å: Chain G: M.153 Chain I: M.153 Chain Q: M.153 Chain R: M.153 Ligand excluded by PLIP AG.15: 4 residues within 4Å: Chain H: E.49, H.53, E.126 Chain T: M.170 Ligand excluded by PLIP AG.16: 5 residues within 4Å: Chain I: E.49, H.53, W.122, E.126 Chain U: M.170 Ligand excluded by PLIP AG.17: 4 residues within 4Å: Chain J: E.49, H.53, E.126 Chain V: M.170 Ligand excluded by PLIP AG.18: 5 residues within 4Å: Chain K: E.49, H.53, E.126, E.130 Chain W: M.170 Ligand excluded by PLIP AG.19: 4 residues within 4Å: Chain A: M.153 Chain C: M.153 Chain K: M.153 Chain L: M.153 Ligand excluded by PLIP AG.20: 4 residues within 4Å: Chain L: E.49, H.53, E.126 Chain X: M.170 Ligand excluded by PLIP AG.21: 5 residues within 4Å: Chain A: M.170 Chain M: E.49, H.53, W.122, E.126 Ligand excluded by PLIP AG.22: 5 residues within 4Å: Chain B: M.170 Chain N: E.49, H.53, W.122, E.126 Ligand excluded by PLIP AG.23: 5 residues within 4Å: Chain C: M.170 Chain O: E.49, H.53, W.122, E.126 Ligand excluded by PLIP AG.24: 5 residues within 4Å: Chain D: M.170 Chain P: E.49, H.53, W.122, E.126 Ligand excluded by PLIP AG.25: 5 residues within 4Å: Chain E: M.170 Chain Q: E.49, H.53, W.122, E.126 Ligand excluded by PLIP AG.26: 2 residues within 4Å: Chain Q: H.93, F.96 Ligand excluded by PLIP AG.27: 5 residues within 4Å: Chain F: M.170 Chain R: E.49, H.53, W.122, E.126 Ligand excluded by PLIP AG.28: 5 residues within 4Å: Chain G: M.170 Chain S: E.49, H.53, W.122, E.126 Ligand excluded by PLIP AG.29: 5 residues within 4Å: Chain H: M.170 Chain T: E.49, H.53, W.122, E.126 Ligand excluded by PLIP AG.30: 6 residues within 4Å: Chain I: M.170 Chain U: E.49, H.53, W.122, E.126, E.130 Ligand excluded by PLIP AG.31: 4 residues within 4Å: Chain J: M.170 Chain V: E.49, H.53, E.126 Ligand excluded by PLIP AG.32: 4 residues within 4Å: Chain K: M.170 Chain W: E.49, H.53, E.126 Ligand excluded by PLIP AG.33: 5 residues within 4Å: Chain L: M.170 Chain X: E.49, H.53, W.122, E.126 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kasyutich, O. et al., Silver Ion Incorporation and Nanoparticle Formation Inside the Cavity of Pyrococcus Furiosus Ferritin: Structural and Size-Distribution Analyses. J.Am.Chem.Soc. (2010)

Release Date

2010-04-21

Peptides

PUTATIVE FERRITIN HOMOLOG: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

C
2

D
3

E
4

F
5

G
6

H
7

I
8

J
9

K
G

L
H

M
I

N
J

O
K

P
L

Q
M

R
N

S
O

T
P

U
Q

V
R

W
Y

X
Z

PUTATIVE FERRITIN HOMOLOG