SMTL ID : 2x27.1

Crystal structure of the outer membrane protein OprG from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

3 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: D.173, D.175, D.198 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.173, A:D.175, A:D.175, A:D.198, H2O.4 NI.2: 2 residues within 4Å: Chain A: H.162, H.211 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.162, A:H.211, H2O.4, H2O.4 NI.3: 2 residues within 4Å: Chain A: P.21, D.23 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.23

12 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.4: 5 residues within 4Å: Chain A: I.12, R.13, G.14, G.207, Y.208 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.208 C8E.5: 8 residues within 4Å: Chain A: L.99, G.115, G.116, L.117, E.152, L.153 Ligands: C8E.7, C8E.15 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.153 C8E.6: 1 residues within 4Å: Chain A: Y.101 No protein-ligand interaction detected (PLIP) C8E.7: 8 residues within 4Å: Chain A: L.149, G.151, E.152, L.153, Y.171, D.173, W.200 Ligands: C8E.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.153, A:Y.171, A:W.200 C8E.8: 6 residues within 4Å: Chain A: G.14, G.15, F.16, T.46, Q.47, L.48 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.14 C8E.9: 4 residues within 4Å: Chain A: L.153, V.169, W.200, Y.202 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.153, A:V.169 C8E.10: 5 residues within 4Å: Chain A: L.97, L.98, L.99, V.119, W.147 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.97 C8E.11: 3 residues within 4Å: Chain A: G.118, G.148, L.149 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.149 C8E.12: 3 residues within 4Å: Chain A: F.111, F.155, Y.157 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.111, A:F.111, A:F.155, A:Y.157 C8E.13: 2 residues within 4Å: Chain A: F.16, I.204 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.16, A:F.16, A:F.16, A:I.204, A:I.204 C8E.14: 3 residues within 4Å: Chain A: P.95, V.119, Y.121 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.95 Hydrogen bonds: A:L.97, A:V.119 C8E.15: 4 residues within 4Å: Chain A: P.103, Y.114, G.115 Ligands: C8E.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Touw, D.S. et al., The Crystal Structure of Oprg from Pseudomonas Aeruginosa, a Potential Channel for Transport of Hydrophobic Molecules Across the Outer Membrane. Plos One (2010)

Release Date

2010-12-15

Peptides

OUTER MEMBRANE PROTEIN OPRG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Membrane

We predict this structure to be a membrane protein.
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OUTER MEMBRANE PROTEIN OPRG