SMTL ID : 2x2h.1 (3 other biounits)

Crystal structure of the Gracilariopsis lemaneiformis alpha-1,4- glucan lyase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: D.228, D.501, Y.502, M.543, R.638, D.654 Ligands: GOL.3, ACT.11 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.228, A:D.501, A:R.638, A:R.638 Water bridges: A:D.228 GOL.2: 8 residues within 4Å: Chain A: V.545, P.546, T.580, Y.581, P.583, M.600, R.604, H.607 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.580, A:Y.581, A:R.604, A:R.604 GOL.3: 9 residues within 4Å: Chain A: F.362, D.401, N.448, Y.502, W.540, D.542, F.687, H.720 Ligands: GOL.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.401, A:H.720 Water bridges: A:N.448, A:N.448, A:R.638 GOL.4: 6 residues within 4Å: Chain A: K.352, R.874, Y.887, T.888, D.889, G.914 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.352, A:R.874, A:R.874, A:T.888 Water bridges: A:L.884, A:D.889, A:G.914 GOL.5: 6 residues within 4Å: Chain A: M.781, Y.782, N.783, D.802, Y.804, R.866 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:M.781, A:N.783, A:D.802, A:D.802, A:R.866, A:R.866 Water bridges: A:N.783 GOL.6: 3 residues within 4Å: Chain A: D.702, T.817, Q.858 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.858 Water bridges: A:D.702, A:N.815, A:S.816, A:S.859 GOL.7: 7 residues within 4Å: Chain A: V.17, G.21, F.22, S.23, W.30, A.181, Q.307 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.23, A:S.23, A:Q.307 Water bridges: A:N.180

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.8: 5 residues within 4Å: Chain A: S.974, G.975, A.976, G.977, S.978 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.974 ACT.9: 6 residues within 4Å: Chain A: N.457, Q.460, Y.462, N.465, Q.466, R.469 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.457, A:Y.462 Hydrogen bonds: A:Y.462, A:Q.466 Water bridges: A:R.469 ACT.10: 10 residues within 4Å: Chain A: K.749, F.750, F.832, G.833, P.834, D.835, F.836, S.859, E.860, S.861 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.750 Hydrogen bonds: A:D.835, A:D.835, A:S.861 Water bridges: A:D.835 ACT.11: 4 residues within 4Å: Chain A: D.228, Q.234, K.579 Ligands: GOL.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.228 Water bridges: A:Q.234, A:K.579 Salt bridges: A:K.579

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 4 residues within 4Å: Chain A: Y.255, T.544, V.545, R.638 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rozeboom, H.J. et al., Crystal Structure of Alpha-1,4-Glucan Lyase, a Unique Glycoside Hydrolase Family Member with a Novel Catalytic Mechanism. J.Biol.Chem. (2013)

Release Date

2011-01-19

Peptides

ALPHA-1,4-GLUCAN LYASE ISOZYME 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ALPHA-1,4-GLUCAN LYASE ISOZYME 1

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