SMTL ID : 2x3l.1

Crystal Structure of the Orn_Lys_Arg decarboxylase family protein SAR0482 from Methicillin-resistant Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 15 residues within 4Å: Chain A: G.80, T.81, T.82, H.106, T.153, D.181, A.183, H.184, S.208, H.210, K.211, S.220 Chain B: T.243, S.244, S.245 14 PLIP interactions: 11 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:T.153, A:A.183, A:K.211 Hydrogen bonds: A:T.81, A:T.82, A:S.208, A:K.211, A:S.220, B:T.243, B:S.244, B:S.245 Salt bridges: A:H.210, A:K.211 pi-Stacking: A:H.106 PLP.7: 15 residues within 4Å: Chain A: T.243, S.244, S.245 Chain B: G.80, T.81, T.82, H.106, T.153, D.181, A.183, H.184, S.208, H.210, K.211, S.220 14 PLIP interactions: 11 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:T.153, B:A.183, B:K.211 Hydrogen bonds: B:T.81, B:T.82, B:S.208, B:K.211, B:S.220, A:T.243, A:S.244, A:S.245 Salt bridges: B:H.210, B:K.211 pi-Stacking: B:H.106

7 x SM: SAMARIUM (III) ION(Non-covalent)

SM.2: 1 residues within 4Å: Chain A: E.417 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.417 SM.3: 2 residues within 4Å: Chain A: N.418, E.421 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.421, H2O.3 SM.4: 2 residues within 4Å: Chain A: E.425, E.428 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.425, A:E.425, A:E.428 SM.5: 1 residues within 4Å: Chain A: D.351 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.351, A:D.351, H2O.3, H2O.3 SM.8: 3 residues within 4Å: Chain B: D.98, E.119, N.373 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.119 SM.9: 1 residues within 4Å: Chain B: E.124 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.124, B:E.124 SM.10: 1 residues within 4Å: Chain B: E.301 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.301, B:E.301

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oke, M. et al., The Scottish Structural Proteomics Facility: Targets, Methods and Outputs. J.Struct.Funct.Genomics (2010)

Release Date

2010-07-21

Peptides

ORN/LYS/ARG DECARBOXYLASE FAMILY PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ORN/LYS/ARG DECARBOXYLASE FAMILY PROTEIN