SMTL ID : 2x40.1

STRUCTURE OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN COMPLEX WITH GLYCEROL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

8 x BR: BROMIDE ION(Non-covalent)

BR.1: 2 residues within 4Å: Chain A: R.340, Y.592 Ligand excluded by PLIP BR.2: 5 residues within 4Å: Chain A: R.454, S.456, R.462, G.500, S.501 Ligand excluded by PLIP BR.3: 7 residues within 4Å: Chain A: N.121, I.122, V.166, A.167, N.169, Y.190, F.194 Ligand excluded by PLIP BR.4: 2 residues within 4Å: Chain A: T.558, V.571 Ligand excluded by PLIP BR.6: 2 residues within 4Å: Chain B: R.340, Y.592 Ligand excluded by PLIP BR.7: 5 residues within 4Å: Chain B: R.454, S.456, R.462, G.500, S.501 Ligand excluded by PLIP BR.8: 7 residues within 4Å: Chain B: N.121, I.122, V.166, A.167, N.169, Y.190, F.194 Ligand excluded by PLIP BR.9: 2 residues within 4Å: Chain B: T.558, V.571 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: D.58, R.130, K.163, H.164, M.207, D.242, W.243, S.370 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.130, A:K.163, A:D.242, A:S.370 Water bridges: A:R.130, A:Y.210 GOL.10: 8 residues within 4Å: Chain B: D.58, R.130, K.163, H.164, M.207, D.242, W.243, S.370 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.130, B:K.163, B:D.242, B:S.370 Water bridges: B:R.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pozzo, T. et al., Structural and Functional Analysis of Beta-Glucosidase 3B from Thermotoga Neapolitana: A Thermostable 3-Domain Representative of Glycoside Hydrolase Family 3. J.Mol.Biol. (2010)

Release Date

2010-02-09

Peptides

BETA-GLUCOSIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BETA-GLUCOSIDASE

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