SMTL ID : 2x4k.1

Crystal structure of SAR1376, a putative 4-oxalocrotonate tautomerase from the methicillin-resistant Staphylococcus aureus (MRSA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

homo-hexamer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 14 residues within 4Å: Chain A: K.9, E.46 Chain C: N.7, K.9, E.46 Chain E: K.9, E.46 Ligands: ZN.2, PO4.9, ZN.10, PO4.14, PO4.17, ZN.18, PO4.22 5 PLIP interactions: 3 interactions with chain E, 1 interactions with chain A, 1 interactions with chain C Water bridges: E:N.7, E:N.7 Salt bridges: E:K.9, A:K.9, C:K.9 PO4.6: 13 residues within 4Å: Chain B: K.9, E.46 Chain D: K.9, E.46 Chain F: K.9, E.46 Ligands: ZN.7, PO4.9, PO4.14, ZN.15, PO4.17, PO4.22, ZN.23 6 PLIP interactions: 2 interactions with chain B, 1 interactions with chain F, 1 interactions with chain C, 2 interactions with chain D Water bridges: B:N.7, C:N.7, D:N.7 Salt bridges: B:K.9, F:K.9, D:K.9 PO4.9: 14 residues within 4Å: Chain A: K.9, E.46 Chain C: K.9, E.46 Chain E: N.7, K.9, E.46 Ligands: PO4.1, ZN.2, PO4.6, ZN.10, PO4.17, ZN.18, PO4.22 4 PLIP interactions: 2 interactions with chain E, 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: E:N.7 Salt bridges: E:K.9, A:K.9, C:K.9 PO4.14: 13 residues within 4Å: Chain B: K.9, E.46 Chain D: K.9, E.46 Chain F: K.9, E.46 Ligands: PO4.1, PO4.6, ZN.7, ZN.15, PO4.17, PO4.22, ZN.23 6 PLIP interactions: 1 interactions with chain B, 2 interactions with chain F, 1 interactions with chain E, 2 interactions with chain D Salt bridges: B:K.9, F:K.9, D:K.9 Water bridges: F:N.7, E:N.7, D:N.7 PO4.17: 14 residues within 4Å: Chain A: N.7, K.9, E.46 Chain C: K.9, E.46 Chain E: K.9, E.46 Ligands: PO4.1, ZN.2, PO4.6, PO4.9, ZN.10, PO4.14, ZN.18 6 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C, 1 interactions with chain E Hydrogen bonds: A:N.7 Salt bridges: A:K.9, C:K.9, E:K.9 Water bridges: C:N.7, C:N.7 PO4.22: 13 residues within 4Å: Chain B: K.9, E.46 Chain D: K.9, E.46 Chain F: K.9, E.46 Ligands: PO4.1, PO4.6, ZN.7, PO4.9, PO4.14, ZN.15, ZN.23 6 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B, 2 interactions with chain F, 1 interactions with chain A Salt bridges: D:K.9, B:K.9, F:K.9 Water bridges: B:N.7, F:N.7, A:N.7

15 x ZN: ZINC ION(Non-covalent)

ZN.2: 11 residues within 4Å: Chain A: K.9, E.46 Chain C: K.9, E.46 Chain E: K.9, E.46 Ligands: PO4.1, PO4.9, ZN.10, PO4.17, ZN.18 5 PLIP interactions: 1 interactions with chain E, 2 interactions with chain A, 2 interactions with chain C Metal complexes: E:E.46, A:E.46, A:E.46, C:E.46, C:E.46 ZN.3: 3 residues within 4Å: Chain A: H.42 Chain B: D.62 Chain F: H.42 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain F, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.62, B:D.62, F:H.42, A:H.42, H2O.2 ZN.4: 1 residues within 4Å: Chain A: E.31 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.31, A:E.31 ZN.7: 11 residues within 4Å: Chain B: K.9, E.46 Chain D: K.9, E.46 Chain F: K.9, E.46 Ligands: PO4.6, PO4.14, ZN.15, PO4.22, ZN.23 5 PLIP interactions: 1 interactions with chain D, 2 interactions with chain F, 2 interactions with chain B Metal complexes: D:E.46, F:E.46, F:E.46, B:E.46, B:E.46 ZN.8: 3 residues within 4Å: Chain B: L.19, E.47 Chain D: H.52 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Metal complexes: B:E.47, B:E.47, D:H.52 ZN.10: 11 residues within 4Å: Chain A: K.9, E.46 Chain C: K.9, E.46 Chain E: K.9, E.46 Ligands: PO4.1, ZN.2, PO4.9, PO4.17, ZN.18 5 PLIP interactions: 2 interactions with chain E, 1 interactions with chain A, 2 interactions with chain C Metal complexes: E:E.46, E:E.46, A:E.46, C:E.46, C:E.46 ZN.11: 3 residues within 4Å: Chain B: H.42 Chain C: H.42 Chain D: D.62 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:H.42, D:D.62, D:D.62, C:H.42, H2O.4 ZN.12: 1 residues within 4Å: Chain C: E.31 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.31, C:E.31 ZN.15: 11 residues within 4Å: Chain B: K.9, E.46 Chain D: K.9, E.46 Chain F: K.9, E.46 Ligands: PO4.6, ZN.7, PO4.14, PO4.22, ZN.23 5 PLIP interactions: 2 interactions with chain D, 1 interactions with chain F, 2 interactions with chain B Metal complexes: D:E.46, D:E.46, F:E.46, B:E.46, B:E.46 ZN.16: 3 residues within 4Å: Chain D: L.19, E.47 Chain F: H.52 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain D Metal complexes: F:H.52, D:E.47, D:E.47 ZN.18: 11 residues within 4Å: Chain A: K.9, E.46 Chain C: K.9, E.46 Chain E: K.9, E.46 Ligands: PO4.1, ZN.2, PO4.9, ZN.10, PO4.17 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 2 interactions with chain E Metal complexes: A:E.46, A:E.46, C:E.46, E:E.46, E:E.46 ZN.19: 3 residues within 4Å: Chain D: H.42 Chain E: H.42 Chain F: D.62 5 PLIP interactions: 2 interactions with chain F, 1 interactions with chain D, 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: F:D.62, F:D.62, D:H.42, E:H.42, H2O.7 ZN.20: 1 residues within 4Å: Chain E: E.31 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:E.31, E:E.31 ZN.23: 11 residues within 4Å: Chain B: K.9, E.46 Chain D: K.9, E.46 Chain F: K.9, E.46 Ligands: PO4.6, ZN.7, PO4.14, ZN.15, PO4.22 5 PLIP interactions: 2 interactions with chain F, 1 interactions with chain B, 2 interactions with chain D Metal complexes: F:E.46, F:E.46, B:E.46, D:E.46, D:E.46 ZN.24: 3 residues within 4Å: Chain B: H.52 Chain F: L.19, E.47 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain B Metal complexes: F:E.47, F:E.47, B:H.52

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 3 residues within 4Å: Chain A: K.32 Chain B: E.25, D.28 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:K.32 Hydrogen bonds: B:D.28 ACT.13: 3 residues within 4Å: Chain C: K.32 Chain D: E.25, D.28 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.28 Salt bridges: C:K.32 ACT.21: 3 residues within 4Å: Chain E: K.32 Chain F: E.25, D.28 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Salt bridges: E:K.32 Hydrogen bonds: F:D.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oke, M. et al., The Scottish Structural Proteomics Facility: Targets, Methods and Outputs. J.Struct.Funct.Genomics (2010)

Release Date

2010-07-21

Peptides

4-OXALOCROTONATE TAUTOMERASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

4-OXALOCROTONATE TAUTOMERASE