SMTL ID : 2x4m.4 (3 other biounits)

Yersinia Pestis Plasminogen Activator Pla

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: K.54, R.70, E.111, D.113, Q.135, K.195, V.228, T.246 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.113, A:T.246 Salt bridges: A:K.54, A:R.70, A:K.195 SO4.2: 5 residues within 4Å: Chain A: A.103, T.144, G.145, G.146, K.161 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.146 Salt bridges: A:K.161 SO4.3: 4 residues within 4Å: Chain A: R.171, S.173, R.201, H.203 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.173 Salt bridges: A:R.171, A:R.201, A:H.203 SO4.4: 3 residues within 4Å: Chain A: R.171, H.203, N.205 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.205 Salt bridges: A:R.171, A:H.203 SO4.5: 3 residues within 4Å: Chain A: T.236, N.238, Y.290 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.236, A:T.236, A:N.238, A:Y.290 SO4.6: 2 residues within 4Å: Chain A: V.163, R.164 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.164 SO4.7: 4 residues within 4Å: Chain A: D.84, H.208, R.211 Ligands: C8E.10 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.84, A:D.84 Salt bridges: A:H.208, A:R.211

3 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.8: 10 residues within 4Å: Chain A: L.53, K.54, G.55, G.71, W.72, T.73, N.110, E.111, R.138 Ligands: C8E.9 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.73 C8E.9: 8 residues within 4Å: Chain A: G.55, D.56, I.57, A.69, R.70, G.71, Y.112 Ligands: C8E.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.57, A:Y.112 C8E.10: 4 residues within 4Å: Chain A: E.29, H.208, R.211 Ligands: SO4.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eren, E. et al., An Active Site Water Network in the Plasminogen Activator Pla from Yersinia Pestis. Structure (2010)

Release Date

2010-07-28

Peptides

COAGULASE/FIBRINOLYSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Membrane

We predict this structure to be a membrane protein.
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COAGULASE/FIBRINOLYSIN

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