SMTL ID : 2x55.1

Yersinia Pestis Plasminogen Activator Pla (Native)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

23 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 2 residues within 4Å: Ligands: C8E.7, C8E.11 No protein-ligand interaction detected (PLIP) C8E.2: 4 residues within 4Å: Chain A: L.114, V.116, Y.134 Ligands: C8E.17 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.116, A:Y.134 C8E.3: 10 residues within 4Å: Chain A: L.53, K.54, G.55, G.71, W.72, T.73, N.110, Y.112, R.138 Ligands: C8E.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.53 C8E.4: 4 residues within 4Å: Chain A: L.53, S.74, L.75 Ligands: C8E.7 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.53 C8E.5: 5 residues within 4Å: Chain A: D.12, W.59, P.61, Y.62, L.65 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.59, A:P.61, A:Y.62 C8E.6: 5 residues within 4Å: Chain A: G.133, P.175, Y.176, I.177, W.199 No protein-ligand interaction detected (PLIP) C8E.7: 3 residues within 4Å: Ligands: C8E.1, C8E.3, C8E.4 No protein-ligand interaction detected (PLIP) C8E.8: 3 residues within 4Å: Chain A: V.235, V.241 Ligands: C8E.15 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.235 C8E.9: 5 residues within 4Å: Chain A: Y.126, K.127, G.181, L.190 Ligands: C8E.23 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.126 C8E.10: 1 residues within 4Å: Chain A: Y.62 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.62, A:Y.62 C8E.11: 8 residues within 4Å: Chain A: G.55, D.56, I.57, A.69, R.70, G.71, Y.112 Ligands: C8E.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.57, A:Y.112, A:Y.112 C8E.12: 8 residues within 4Å: Chain A: A.128, L.179, A.180, G.181, A.192, L.193, F.194, T.227 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.128, A:A.192, A:F.194 C8E.13: 7 residues within 4Å: Chain A: E.29, M.30, H.208, F.215, E.217, I.270 Ligands: C8E.22 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.29, A:F.215, A:I.270 Water bridges: A:R.211 C8E.14: 4 residues within 4Å: Chain A: T.20, G.21, V.284, A.286 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.284, A:A.286 C8E.15: 5 residues within 4Å: Chain A: V.241, A.286, G.287 Ligands: C8E.8, C8E.21 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.241, A:A.286 C8E.16: 4 residues within 4Å: Chain A: A.231, A.243, E.244, F.245 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.231, A:A.243, A:F.245 C8E.17: 5 residues within 4Å: Chain A: I.57, W.59, L.67 Ligands: C8E.2, C8E.20 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.57, A:W.59, A:L.67 C8E.18: 5 residues within 4Å: Chain A: I.130, I.177, G.178, L.179, F.196 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.130, A:I.177, A:L.179 C8E.19: 7 residues within 4Å: Chain A: F.64, L.65, V.116, G.118, W.119, L.120, I.130 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.64 C8E.20: 3 residues within 4Å: Chain A: F.14, W.59 Ligands: C8E.17 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.14, A:F.14, A:W.59, A:W.59 C8E.21: 5 residues within 4Å: Chain A: A.231, V.241, F.242, A.243 Ligands: C8E.15 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.241 C8E.22: 4 residues within 4Å: Chain A: S.41, D.86, M.88 Ligands: C8E.13 No protein-ligand interaction detected (PLIP) C8E.23: 3 residues within 4Å: Chain A: Y.126, Y.183 Ligands: C8E.9 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.183

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.24: 2 residues within 4Å: Chain A: Y.62, S.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.63, A:S.63 SO4.25: 4 residues within 4Å: Chain A: R.171, S.173, R.201, H.203 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.173 Water bridges: A:S.173 Salt bridges: A:R.171, A:R.201, A:H.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eren, E. et al., An Active Site Water Network in the Plasminogen Activator Pla from Yersinia Pestis. Structure (2010)

Release Date

2010-07-28

Peptides

COAGULASE/FIBRINOLYSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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COAGULASE/FIBRINOLYSIN