SMTL ID : 2x5d.1

Crystal Structure of a probable aminotransferase from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-tetramer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)(Non-covalent)

PLP.1: 14 residues within 4Å: Chain A: M.44, G.45, N.46, P.47, Y.133, N.183, S.244, K.245, A.250, Y.330, R.374 Chain D: Y.71, Y.276 Ligands: SO4.3 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:K.245, A:A.250, D:Y.71, D:Y.276 Hydrogen bonds: A:G.45, A:N.183, A:S.244, A:K.245 Salt bridges: A:R.374 PLP.10: 13 residues within 4Å: Chain D: G.107, S.108, K.109, Y.133, N.183, D.211, A.213, Y.214, T.242, S.244, K.245, R.253 Ligands: SO4.12 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:Y.133, D:Y.214 Hydrogen bonds: D:S.108, D:K.109, D:Y.133, D:N.183, D:T.242, D:S.244, D:S.244, D:K.245 Water bridges: D:S.108 Salt bridges: D:K.109, D:R.253

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: Q.303, R.307, N.380, R.381 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.381 Salt bridges: A:R.307, A:R.381 SO4.3: 7 residues within 4Å: Chain A: G.107, S.108, K.109, T.242, S.244 Chain D: Y.276 Ligands: PLP.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.108, A:K.109, A:S.244, A:S.244 Water bridges: A:G.107, A:E.110 SO4.4: 4 residues within 4Å: Chain B: Q.303, R.307, N.380, R.381 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.381 Salt bridges: B:R.307, B:R.381 SO4.5: 5 residues within 4Å: Chain B: G.107, S.108, K.109, T.242, R.253 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.108, B:K.109, B:T.242, B:T.242 Salt bridges: B:R.253 SO4.6: 1 residues within 4Å: Chain C: R.389 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.389 SO4.7: 3 residues within 4Å: Chain C: R.307, N.380, R.381 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.381 Salt bridges: C:R.307, C:R.381 SO4.8: 5 residues within 4Å: Chain C: G.107, S.108, K.109, T.242, R.253 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.108, C:K.109, C:T.242, C:T.242, C:R.253 Water bridges: C:I.106, C:E.110 SO4.9: 7 residues within 4Å: Chain C: S.74, R.75, G.76, I.77, G.277, T.278, Q.283 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.74, C:G.76, C:T.278, C:T.278, C:Q.283 SO4.11: 4 residues within 4Å: Chain D: G.292, D.293, Q.294, R.298 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.292, D:Q.294 Salt bridges: D:R.298 SO4.12: 7 residues within 4Å: Chain D: M.44, G.45, Y.133, N.183, Y.330, R.374 Ligands: PLP.10 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.45, D:N.183, D:Y.330, D:Y.330 Salt bridges: D:R.374 SO4.13: 2 residues within 4Å: Chain D: R.381, R.385 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.381, D:R.385

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oke, M. et al., The Scottish Structural Proteomics Facility: Targets, Methods and Outputs. J.Struct.Funct.Genom. (2010)

Release Date

2010-07-21

Peptides

PROBABLE AMINOTRANSFERASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PROBABLE AMINOTRANSFERASE