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SMTL ID : 2x5f.1
CRYSTAL STRUCTURE OF THE METHICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS SAR2028, AN ASPARTATE_TYROSINE_PHENYLALANINE PYRIDOXAL-5'-PHOSPHATE DEPENDENT AMINOTRANSFERASE
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Non-covalent)
PLP.1:
14 residues within 4Å:
Chain A:
A.121
,
L.122
,
T.123
,
W.147
,
Y.150
,
N.196
,
N.200
,
D.233
,
A.235
,
Y.236
,
T.270
,
K.271
,
R.279
Chain B:
Y.84
15
PLIP interactions
:
13 interactions with chain A
,
2 interactions with chain B
Hydrophobic interactions:
A:W.147
,
A:W.147
,
A:N.200
Hydrogen bonds:
A:L.122
,
A:T.123
,
A:N.200
,
A:T.270
,
A:K.271
,
B:Y.84
Water bridges:
A:T.123
,
B:S.309
Salt bridges:
A:K.271
,
A:R.279
pi-Stacking:
A:W.147
,
A:W.147
PLP.6:
14 residues within 4Å:
Chain A:
Y.84
Chain B:
A.121
,
L.122
,
T.123
,
W.147
,
Y.150
,
N.196
,
N.200
,
D.233
,
A.235
,
Y.236
,
T.270
,
K.271
,
R.279
15
PLIP interactions
:
12 interactions with chain B
,
3 interactions with chain A
Hydrophobic interactions:
B:W.147
,
B:N.200
,
B:Y.236
Hydrogen bonds:
B:L.122
,
B:T.123
,
B:T.123
,
B:N.200
,
B:K.271
,
A:Y.84
,
A:Y.84
Salt bridges:
B:K.271
,
B:R.279
pi-Stacking:
B:W.147
,
B:W.147
Water bridges:
A:S.309
2 x
EPE
:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
(Non-functional Binders)
EPE.2:
8 residues within 4Å:
Chain A:
Q.16
,
S.17
,
N.18
,
S.258
,
N.259
,
T.287
,
S.288
,
D.289
11
PLIP interactions
:
11 interactions with chain A
Hydrogen bonds:
A:Q.16
,
A:N.18
,
A:S.258
,
A:S.288
,
A:S.288
,
A:D.289
Water bridges:
A:N.18
,
A:S.258
,
A:N.259
Salt bridges:
A:D.289
,
A:D.289
EPE.4:
8 residues within 4Å:
Chain B:
Q.16
,
S.17
,
N.18
,
S.258
,
N.259
,
T.287
,
S.288
,
D.289
6
PLIP interactions
:
6 interactions with chain B
Hydrogen bonds:
B:N.18
,
B:S.258
,
B:T.287
,
B:S.288
Salt bridges:
B:D.289
,
B:D.289
2 x
PO4
:
PHOSPHATE ION
(Non-functional Binders)
PO4.3:
4 residues within 4Å:
Chain A:
T.339
,
R.343
,
E.411
,
K.412
4
PLIP interactions
:
4 interactions with chain A
Hydrogen bonds:
A:E.411
,
A:E.411
,
A:K.412
Salt bridges:
A:R.343
PO4.7:
5 residues within 4Å:
Chain A:
N.59
Chain B:
T.339
,
R.343
,
E.411
,
K.412
3
PLIP interactions
:
3 interactions with chain B
Hydrogen bonds:
B:E.411
,
B:K.412
Salt bridges:
B:R.343
1 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.5:
3 residues within 4Å:
Chain B:
G.130
,
V.134
,
N.158
4
PLIP interactions
:
2 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
B:G.130
,
B:V.134
,
H
2
O.165
,
H
2
O.178
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Oke, M. et al., The Scottish Structural Proteomics Facility: Targets, Methods and Outputs. J.Struct.Funct.Genom. (2010)
Release Date
2010-07-21
Peptides
ASPARTATE_TYROSINE_PHENYLALANINE PYRIDOXAL-5' PHOSPHATE-DEPENDENT AMINOTRANSFERASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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ASPARTATE_TYROSINE_PHENYLALANINE PYRIDOXAL-5' PHOSPHATE-DEPENDENT AMINOTRANSFERASE
Cartoon
Cartoon
Tube
Trace
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