SMTL ID : 2x5z.1

Crystal structure of T. maritima GDP-mannose pyrophosphorylase in complex with GDP-mannose.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x GDD: GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE(Non-covalent)

GDD.1: 26 residues within 4Å: Chain A: L.7, A.8, G.9, G.10, V.56, E.80, K.83, K.84, N.85, T.86, A.89, P.107, A.108, D.109, H.110, Y.149, G.150, E.170, K.171, N.189, S.190, G.191, D.239, W.258, D.260 Ligands: MG.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.9, A:V.56, A:K.84, A:N.85, A:A.108, A:D.109, A:H.110, A:G.150, A:E.170, A:N.189, A:N.189, A:D.239 Water bridges: A:K.25 Salt bridges: A:E.80, A:K.171, A:K.171 GDD.3: 25 residues within 4Å: Chain B: L.7, A.8, G.9, G.10, V.56, E.80, K.83, K.84, N.85, T.86, P.107, A.108, D.109, H.110, G.148, Y.149, G.150, E.170, K.171, N.189, S.190, G.191, D.239, W.258, D.260 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:G.9, B:V.56, B:K.84, B:N.85, B:A.108, B:D.109, B:D.109, B:H.110, B:G.150, B:E.170, B:N.189, B:N.189, B:D.239 Salt bridges: B:E.80, B:K.171, B:K.171

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.109, D.260 Ligands: GDD.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.109, A:D.260, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pelissier, M.C. et al., Structural Insights Into the Catalytic Mechanism of Bacterial Guanosine-Diphospho-D-Mannose Pyrophosphorylase and its Regulation by Divalent Ions. J.Biol.Chem. (2010)

Release Date

2010-06-23

Peptides

MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE

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