SMTL ID : 2x6k.1

THE CRYSTAL STRUCTURE OF THE DROSOPHILA CLASS III PI3-KINASE VPS34 IN COMPLEX WITH PI-103

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: S.422, A.423 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.422, A:A.423 SO4.2: 2 residues within 4Å: Chain A: R.416, K.428 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.416, A:K.428 SO4.5: 2 residues within 4Å: Chain B: R.416, K.428 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.416, B:K.428

2 x X6K: 3-(4-MORPHOLIN-4-YLPYRIDO[3',2':4,5]FURO[3,2-D]PYRIMIDIN-2-YL)PHENOL(Non-covalent)

X6K.3: 13 residues within 4Å: Chain A: F.420, K.421, S.422, I.443, K.445, D.453, L.491, Q.492, V.494, S.496, L.559, I.569, D.570 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.421, A:L.491, A:I.569, A:D.570 Hydrogen bonds: A:K.445, A:V.494, A:D.570 pi-Stacking: A:F.420 X6K.4: 13 residues within 4Å: Chain B: F.420, K.421, I.443, K.445, D.453, Y.479, L.491, Q.492, Y.493, V.494, S.496, I.569, D.570 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:K.421, B:L.491, B:I.569, B:I.569 Hydrogen bonds: B:K.445, B:V.494, B:D.570 pi-Stacking: B:F.420, B:F.420

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, S. et al., Shaping Development of Autophagy Inhibitors with the Structure of the Lipid Kinase Vps34. Science (2010)

Release Date

2010-04-07

Peptides

PHOSPHOTIDYLINOSITOL 3 KINASE 59F: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PHOSPHOTIDYLINOSITOL 3 KINASE 59F

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