SMTL ID : 2x6m.1

Structure of a single domain camelid antibody fragment in complex with a C-terminal peptide of alpha-synuclein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x ASP- TYR- GLU- PRO- GLU- ALA: ALPHA-SYNUCLEIN PEPTIDE(Non-covalent)

ASP-TYR-GLU-PRO-GLU-ALA.1: 11 residues within 4Å: Chain A: R.49, N.51, G.55, V.56, K.57, T.58, A.59, Y.104, C.105, G.106, G.107 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.104 Hydrogen bonds: A:N.51, A:V.56, A:K.57, A:G.107 Water bridges: A:K.57, A:K.57, A:K.57, A:K.57, A:T.58, A:T.58, A:C.105, A:C.105 Salt bridges: A:R.49, A:K.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Genst, E.J. et al., Structure and Properties of a Complex of Alpha-Synuclein and a Single-Domain Camelid Antibody. J.Mol.Biol. (2010)

Release Date

2010-06-23

Peptides

HEAVY CHAIN VARIABLE DOMAIN FROM DROMEDARY: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HEAVY CHAIN VARIABLE DOMAIN FROM DROMEDARY