- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x OXL: OXALATE ION(Non-covalent)
- 4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.2: 16 residues within 4Å:- Chain A: R.4, Y.5, N.276
- Chain B: H.141
- Chain D: R.67, H.68, D.69, S.94, T.95, Q.212, R.301, I.303, S.306, S.307, R.310
- Ligands: OXL.1
12 PLIP interactions:6 interactions with chain D, 6 interactions with chain A- Hydrogen bonds: D:E.63, D:R.67, D:D.69, D:Q.212, A:R.4, A:Y.5, A:Y.5, A:N.276
- Water bridges: D:Q.212, A:R.326
- Salt bridges: D:R.310, A:R.4
AMP.6: 16 residues within 4Å:- Chain A: H.141
- Chain B: R.4, Y.5, N.276
- Chain C: R.67, H.68, D.69, S.94, T.95, Q.212, R.301, I.303, S.306, S.307, R.310
- Ligands: OXL.5
15 PLIP interactions:1 interactions with chain A, 7 interactions with chain C, 7 interactions with chain B- Water bridges: A:T.140, B:R.326
- Hydrogen bonds: C:E.63, C:E.63, C:R.67, C:D.69, C:T.95, C:Q.212, B:R.4, B:Y.5, B:Y.5, B:Y.5, B:N.276
- Salt bridges: C:R.310, B:R.4
AMP.10: 16 residues within 4Å:- Chain B: R.67, H.68, D.69, S.94, T.95, Q.212, R.301, I.303, S.306, S.307, R.310
- Chain C: R.4, Y.5, N.276
- Chain D: H.141
- Ligands: OXL.9
15 PLIP interactions:7 interactions with chain B, 1 interactions with chain D, 7 interactions with chain C- Hydrogen bonds: B:E.63, B:E.63, B:R.67, B:D.69, B:T.95, B:Q.212, C:R.4, C:Y.5, C:Y.5, C:Y.5, C:N.276
- Salt bridges: B:R.310, C:R.4
- Water bridges: D:T.140, C:R.326
AMP.14: 16 residues within 4Å:- Chain A: R.67, H.68, D.69, S.94, T.95, Q.212, R.301, I.303, S.306, S.307, R.310
- Chain C: H.141
- Chain D: R.4, Y.5, N.276
- Ligands: OXL.13
12 PLIP interactions:6 interactions with chain D, 6 interactions with chain A- Hydrogen bonds: D:R.4, D:Y.5, D:Y.5, D:N.276, A:E.63, A:R.67, A:D.69, A:Q.212
- Water bridges: D:R.326, A:Q.212
- Salt bridges: D:R.4, A:R.310
- 4 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)
P6G.3: 4 residues within 4Å:- Chain A: A.125, E.126, K.129, N.130
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.129
P6G.7: 4 residues within 4Å:- Chain B: A.125, E.126, K.129, N.130
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.129
P6G.11: 4 residues within 4Å:- Chain C: A.125, E.126, K.129, N.130
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.129
P6G.15: 4 residues within 4Å:- Chain D: A.125, E.126, K.129, N.130
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.129
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 5 residues within 4Å:- Chain A: A.207, V.209, L.214, Q.215, R.218
Ligand excluded by PLIPCL.8: 5 residues within 4Å:- Chain B: A.207, V.209, L.214, Q.215, R.218
Ligand excluded by PLIPCL.12: 5 residues within 4Å:- Chain C: A.207, V.209, L.214, Q.215, R.218
Ligand excluded by PLIPCL.16: 5 residues within 4Å:- Chain D: A.207, V.209, L.214, Q.215, R.218
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fyfe, P.K. et al., Structure of Staphylococcus Aureus Adenylosuccinate Lyase (Purb) and Assessment of its Potential as a Target for Structure-Based Inhibitor Discovery. Acta Crystallogr.,Sect.D (2010)
- Release Date
- 2010-03-09
- Peptides
- ADENYLOSUCCINATE LYASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x OXL: OXALATE ION(Non-covalent)
- 4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 4 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fyfe, P.K. et al., Structure of Staphylococcus Aureus Adenylosuccinate Lyase (Purb) and Assessment of its Potential as a Target for Structure-Based Inhibitor Discovery. Acta Crystallogr.,Sect.D (2010)
- Release Date
- 2010-03-09
- Peptides
- ADENYLOSUCCINATE LYASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A