SMTL ID : 2x77.1

Crystal Structure of Leishmania major ADP ribosylation factor-like 1.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: L.30, D.31, N.32, A.33, G.34, K.35, T.36, S.37, N.131, K.132, D.134, L.135, S.164, S.165, K.166 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.32, A:A.33, A:G.34, A:K.35, A:T.36, A:S.37, A:S.37, A:K.132, A:K.132, A:S.165, A:K.166 Water bridges: A:D.72, A:D.72, A:N.131, A:N.131 Salt bridges: A:K.35, A:D.134 pi-Cation interactions: A:K.132 GDP.3: 17 residues within 4Å: Chain B: L.30, D.31, N.32, A.33, G.34, K.35, T.36, S.37, D.72, N.131, K.132, D.134, L.135, S.164, S.165, K.166 Ligands: MG.4 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:N.32, B:A.33, B:G.34, B:K.35, B:T.36, B:S.37, B:S.37, B:D.72, B:N.131, B:K.132, B:K.132, B:S.165, B:K.166, B:K.166 Water bridges: B:D.72, B:D.72 Salt bridges: B:K.35, B:D.134

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.36, E.59 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.36, H2O.1, H2O.1, H2O.2, H2O.2 MG.4: 3 residues within 4Å: Chain B: T.36, E.59 Ligands: GDP.3 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.36, B:E.59, H2O.3, H2O.4, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fleming, J.R. et al., Crystal Structure of Leishmania Major Adp Ribosylation Factor-Like 1 and a Classification of Related Gtpase Family Members in This Kinetoplastid. Mol.Biochem.Parasitol. (2010)

Release Date

2010-03-02

Peptides

ADP-RIBOSYLATION FACTOR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADP-RIBOSYLATION FACTOR