SMTL ID : 2x7h.1 (1 other biounit)

Crystal structure of the human MGC45594 gene product in complex with fenoprofen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

4 x PFN: FENOPROFEN(Non-covalent)

PFN.1: 9 residues within 4Å: Chain A: Y.160, L.163, K.164, L.169, L.191, K.194, H.317, M.321 Ligands: EDO.9 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.163, A:K.164, A:L.169, A:L.191, A:K.194 pi-Stacking: A:Y.160, A:H.317 PFN.3: 8 residues within 4Å: Chain A: P.143, S.144, K.146, E.148, Y.149, C.322, V.323 Ligands: EDO.10 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.143, A:K.146, A:E.148 Hydrogen bonds: A:Y.149, A:Y.149 Salt bridges: A:K.146 PFN.4: 6 residues within 4Å: Chain A: S.76, Y.85, V.154, Y.274, F.303 Ligands: NAP.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.154, A:F.303 pi-Stacking: A:F.97 PFN.5: 2 residues within 4Å: Chain A: T.278, L.280 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.278, A:L.280

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 30 residues within 4Å: Chain A: N.74, A.75, V.154, T.158, A.179, G.182, G.183, T.184, T.202, C.203, S.204, K.208, Y.223, S.246, V.247, I.268, G.269, F.270, I.271, S.272, Y.274, F.302, F.303, L.304, M.355, Y.356, G.358, N.360, G.362 Ligands: PFN.4 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:V.154, A:T.158 Hydrogen bonds: A:A.75, A:S.76, A:T.158, A:G.183, A:T.184, A:S.204, A:S.204, A:K.208, A:S.246, A:I.268, A:I.271, A:Y.274, A:L.304, A:N.360, A:N.360 Water bridges: A:S.76, A:S.155, A:S.155, A:A.179, A:G.182, A:G.185, A:T.202, A:S.204, A:Y.223, A:Q.275 Salt bridges: A:K.208

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 7 residues within 4Å: Chain A: G.167, G.168, K.173, D.241, V.242, K.262, R.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.168, A:D.241, A:K.262 EDO.7: 4 residues within 4Å: Chain A: Y.223, A.250, M.251, L.254 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.223 Water bridges: A:A.250 EDO.8: 3 residues within 4Å: Chain A: F.270, L.280, S.281 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.281 Water bridges: A:S.281 EDO.9: 2 residues within 4Å: Chain A: K.164 Ligands: PFN.1 No protein-ligand interaction detected (PLIP) EDO.10: 3 residues within 4Å: Chain A: S.144, K.146 Ligands: PFN.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.144, A:K.146 EDO.11: 7 residues within 4Å: Chain A: N.79, Y.80, G.83, R.84, Y.85, D.86, F.93 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.79, A:Y.80, A:G.83, A:Y.85, A:D.86 EDO.12: 8 residues within 4Å: Chain A: P.42, N.43, F.44, I.78, Q.275, V.352, N.353, Y.356 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.42, A:F.44, A:N.353 Water bridges: A:Q.275, A:N.353 EDO.13: 6 residues within 4Å: Chain A: G.229, L.232, K.233, Y.236, D.257, A.258 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.236 EDO.14: 7 residues within 4Å: Chain A: F.252, D.253, V.256, D.257, K.284, A.285, K.291 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.253, A:K.284, A:K.291, A:K.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shafqat, N. et al., Crystal Structure of the Human Mgc45594 Gene Product in Complex with Fenoprofen. To be Published

Release Date

2010-12-08

Peptides

ZINC-BINDING ALCOHOL DEHYDROGENASE DOMAIN-CONTAINING PROTEIN 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ZINC-BINDING ALCOHOL DEHYDROGENASE DOMAIN-CONTAINING PROTEIN 2

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