SMTL ID : 2x87.1

Crystal Structure of the reconstituted CotA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

4 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: H.419, C.492, I.494, H.497, M.502 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.419, A:C.492, A:H.497 CU.2: 5 residues within 4Å: Chain A: H.105, H.107, H.153, H.493 Ligands: OH.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.107, A:H.153, A:H.493, OH.5 CU.3: 7 residues within 4Å: Chain A: H.105, H.155, H.422, H.424, H.491 Ligands: CU.4, OH.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.155, A:H.424, A:H.491, OH.5 CU.4: 6 residues within 4Å: Chain A: H.105, H.107, H.422, H.424 Ligands: CU.3, OH.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.105, A:H.422, H2O.8

1 x OH: HYDROXIDE ION(Non-covalent)

OH.5: 11 residues within 4Å: Chain A: H.105, H.107, H.153, H.155, H.422, H.424, H.491, H.493 Ligands: CU.2, CU.3, CU.4 No protein-ligand interaction detected (PLIP)

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 7 residues within 4Å: Chain A: D.113, D.114, Y.118, A.121, Y.133, K.135, R.487 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.133 Water bridges: A:D.116, A:Y.118, A:K.135 EDO.7: 4 residues within 4Å: Chain A: T.307, A.308, Y.309, E.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.310 EDO.8: 7 residues within 4Å: Chain A: N.74, L.76, P.77, S.78, V.100, S.124, K.125 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.74, A:N.74, A:L.76, A:S.78, A:K.125 EDO.9: 5 residues within 4Å: Chain A: E.188, L.243, E.244, Y.250, K.341 No protein-ligand interaction detected (PLIP) EDO.10: 3 residues within 4Å: Chain A: R.136, E.137, V.138 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.137, A:V.138 EDO.11: 6 residues within 4Å: Chain A: D.268, I.315, A.317, P.328, A.332, N.333 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.328 Water bridges: A:N.333 EDO.12: 6 residues within 4Å: Chain A: K.183, L.184, P.185, S.186, E.348, S.349 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.186, A:S.186, A:E.348 Water bridges: A:R.248, A:R.248, A:D.347

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bento, I. et al., Mechanisms Underlying Dioxygen Reduction in Laccases. Structural and Modelling Studies Focusing on Proton Transfer. Bmc Struct.Biol. (2010)

Release Date

2010-09-22

Peptides

SPORE COAT PROTEIN A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SPORE COAT PROTEIN A

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