SMTL ID : 2x8w.1

The Crystal Structure of Methylglyoxal Synthase from Thermus sp. GH5 Bound to Malonate.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-hexamer

Ligands

6 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 11 residues within 4Å: Chain A: I.7, A.8, H.9, T.35, G.36, T.37, T.38, S.55, G.56, P.57, H.88 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.7 Hydrogen bonds: A:T.35, A:T.37, A:T.38, A:T.38, A:T.38, A:G.56 Water bridges: A:H.9, A:D.10, A:T.37, A:D.61, A:Q.86 Salt bridges: A:H.9, A:H.88 MLI.2: 11 residues within 4Å: Chain B: I.7, A.8, H.9, T.35, G.36, T.37, T.38, S.55, G.56, P.57, H.88 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:I.7 Hydrogen bonds: B:T.37, B:T.37, B:T.38, B:T.38, B:G.56 Water bridges: B:H.9, B:D.10, B:D.61, B:Q.86 Salt bridges: B:H.9, B:H.88 MLI.3: 11 residues within 4Å: Chain C: I.7, A.8, H.9, T.35, G.36, T.37, T.38, S.55, G.56, P.57, H.88 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:I.7 Hydrogen bonds: C:T.35, C:T.37, C:T.38, C:T.38, C:T.38, C:G.56 Water bridges: C:H.9, C:D.10, C:T.37, C:D.61, C:Q.86 Salt bridges: C:H.9, C:H.88 MLI.4: 11 residues within 4Å: Chain D: I.7, A.8, H.9, T.35, G.36, T.37, T.38, S.55, G.56, P.57, H.88 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:I.7 Hydrogen bonds: D:T.37, D:T.37, D:T.38, D:T.38, D:G.56 Water bridges: D:H.9, D:D.10, D:D.61, D:Q.86 Salt bridges: D:H.9, D:H.88 MLI.5: 11 residues within 4Å: Chain E: I.7, A.8, H.9, T.35, G.36, T.37, T.38, S.55, G.56, P.57, H.88 14 PLIP interactions: 14 interactions with chain E Hydrophobic interactions: E:I.7 Hydrogen bonds: E:T.35, E:T.37, E:T.38, E:T.38, E:T.38, E:G.56 Water bridges: E:H.9, E:D.10, E:T.37, E:D.61, E:Q.86 Salt bridges: E:H.9, E:H.88 MLI.6: 11 residues within 4Å: Chain F: I.7, A.8, H.9, T.35, G.36, T.37, T.38, S.55, G.56, P.57, H.88 12 PLIP interactions: 12 interactions with chain F Hydrophobic interactions: F:I.7 Hydrogen bonds: F:T.37, F:T.37, F:T.38, F:T.38, F:G.56 Water bridges: F:H.9, F:D.10, F:D.61, F:Q.86 Salt bridges: F:H.9, F:H.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shahsavar, A. et al., Crystal Structures of Methylglyoxal Synthase from Thermus Sp.Gh5 in the Open and Closed Conformational States Provide Insight Into the Mechanism of Allosteric Regulation. To be Published

Release Date

2011-03-23

Peptides

METHYLGLYOXAL SYNTHASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

METHYLGLYOXAL SYNTHASE