- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NDP.2: 20 residues within 4Å:- Chain A: K.162, G.293, A.294, S.295, Y.296, V.297, E.300, R.317, S.318, R.322, A.390, V.391, G.392, R.393, Q.440, L.441, T.472, F.474
- Ligands: FAD.1, PG4.14
26 PLIP interactions:26 interactions with chain A- Hydrophobic interactions: A:Y.296, A:V.297
- Hydrogen bonds: A:K.162, A:A.294, A:A.294, A:S.295, A:V.297, A:R.317, A:R.317, A:S.318, A:S.318, A:A.390, A:G.392, A:T.472
- Water bridges: A:G.293, A:A.298, A:A.298, A:R.317, A:I.319, A:Q.440, A:T.472
- Salt bridges: A:R.317, A:R.322
- pi-Stacking: A:Y.296
- pi-Cation interactions: A:R.317, A:R.317
NDP.18: 20 residues within 4Å:- Chain B: K.162, G.293, A.294, S.295, Y.296, V.297, E.300, R.317, S.318, R.322, A.390, V.391, G.392, R.393, Q.440, L.441, T.472, F.474
- Ligands: FAD.17, PG4.30
27 PLIP interactions:27 interactions with chain B- Hydrophobic interactions: B:Y.296, B:V.297
- Hydrogen bonds: B:K.162, B:A.294, B:A.294, B:S.295, B:Y.296, B:V.297, B:R.317, B:R.317, B:S.318, B:S.318, B:A.390, B:G.392, B:T.472
- Water bridges: B:G.293, B:A.298, B:A.298, B:R.317, B:I.319, B:Q.440, B:T.472
- Salt bridges: B:R.317, B:R.322
- pi-Stacking: B:Y.296
- pi-Cation interactions: B:R.317, B:R.317
- 4 x GSH: GLUTATHIONE(Non-covalent)
GSH.3: 10 residues within 4Å:- Chain A: K.25, C.28, Y.30, Q.60, T.71, V.72, P.73, D.84, S.85, Q.86
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:T.71
- Hydrogen bonds: A:Q.60, A:V.72, A:V.72, A:D.84, A:S.85, A:Q.86
- Salt bridges: A:K.25
GSH.4: 11 residues within 4Å:- Chain A: K.227, G.228, R.229, L.230, Q.396, L.397, L.401, C.402, T.404, V.405
- Ligands: FAD.1
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.397
- Hydrogen bonds: A:G.228, A:L.230, A:L.401
- Salt bridges: A:K.227
GSH.19: 10 residues within 4Å:- Chain B: K.25, C.28, Y.30, Q.60, T.71, V.72, P.73, D.84, S.85, Q.86
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:T.71
- Hydrogen bonds: B:Q.60, B:V.72, B:V.72, B:D.84, B:S.85, B:Q.86
- Salt bridges: B:K.25
GSH.20: 11 residues within 4Å:- Chain B: K.227, G.228, R.229, L.230, Q.396, L.397, L.401, C.402, T.404, V.405
- Ligands: FAD.17
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.397
- Hydrogen bonds: B:G.228, B:L.230, B:L.401
- Salt bridges: B:K.227
- 2 x CA: CALCIUM ION(Non-covalent)
CA.5: 5 residues within 4Å:- Chain A: D.565, T.567, T.579, T.580
- Chain B: Q.447
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.565, A:T.567, A:T.579, H2O.4
CA.21: 5 residues within 4Å:- Chain A: Q.447
- Chain B: D.565, T.567, T.579, T.580
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.565, B:T.567, B:T.579, H2O.11
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.6: 5 residues within 4Å:- Chain A: T.461, E.462, L.463, T.464, D.465
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.463
- Water bridges: A:D.465
PEG.7: 6 residues within 4Å:- Chain A: S.172, H.173, E.176, A.306, S.307, H.339
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.172, A:E.176, A:E.176
- Water bridges: A:H.173, A:H.173
PEG.8: 4 residues within 4Å:- Chain A: E.509, W.510, P.542
- Chain B: Q.167
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.167
PEG.9: 6 residues within 4Å:- Chain A: K.13, T.14, D.420, Y.429, R.455, L.456
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.14, A:R.455, A:R.455
PEG.10: 3 residues within 4Å:- Chain A: W.10, L.53, N.55
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.55
PEG.16: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PEG.22: 5 residues within 4Å:- Chain B: T.461, E.462, L.463, T.464, D.465
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:L.463
PEG.23: 6 residues within 4Å:- Chain B: S.172, H.173, E.176, A.306, S.307, H.339
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.172, B:E.176
- Water bridges: B:H.173
PEG.24: 4 residues within 4Å:- Chain A: Q.167
- Chain B: E.509, W.510, P.542
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.167
PEG.25: 6 residues within 4Å:- Chain B: K.13, T.14, D.420, Y.429, R.455, L.456
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.14, B:T.14, B:D.420, B:R.455, B:R.455
PEG.26: 3 residues within 4Å:- Chain B: W.10, L.53, N.55
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.55
PEG.32: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 10 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.11: 10 residues within 4Å:- Chain A: S.318, I.319, L.320, Q.326, E.330, G.333, D.334, E.337, F.343, K.345
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.320, A:L.320, A:D.334, A:D.334
PG4.12: 6 residues within 4Å:- Chain A: Y.138, N.225, T.239, D.240, K.241, Q.243
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.225
PG4.13: 3 residues within 4Å:- Chain A: D.488, E.491, K.492
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.492
PG4.14: 8 residues within 4Å:- Chain A: K.262, Y.263, P.264, E.265, V.348, P.349, V.391
- Ligands: NDP.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.262, A:E.265
PG4.15: 7 residues within 4Å:- Chain A: N.102, E.103, S.104, K.105, Y.106, D.107, K.132
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.103, A:E.103, A:E.103, A:S.104
PG4.27: 10 residues within 4Å:- Chain B: S.318, I.319, L.320, Q.326, E.330, G.333, D.334, E.337, F.343, K.345
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:L.320, B:L.320, B:D.334
PG4.28: 6 residues within 4Å:- Chain B: Y.138, N.225, T.239, D.240, K.241, Q.243
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.138
- Water bridges: B:N.225
PG4.29: 3 residues within 4Å:- Chain B: D.488, E.491, K.492
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.492
PG4.30: 8 residues within 4Å:- Chain B: K.262, Y.263, P.264, E.265, V.348, P.349, V.391
- Ligands: NDP.18
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.262, B:E.265
PG4.31: 7 residues within 4Å:- Chain B: N.102, E.103, S.104, K.105, Y.106, D.107, K.132
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.103, B:E.103, B:S.104
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Angelucci, F. et al., Mapping the Catalytic Cycle of Schistosoma Mansoni Thioredoxin Glutathione Reductase by X-Ray Crystallography. J.Biol.Chem. (2010)
- Release Date
- 2010-07-21
- Peptides
- THIOREDOXIN GLUTATHIONE REDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x GSH: GLUTATHIONE(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 10 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Angelucci, F. et al., Mapping the Catalytic Cycle of Schistosoma Mansoni Thioredoxin Glutathione Reductase by X-Ray Crystallography. J.Biol.Chem. (2010)
- Release Date
- 2010-07-21
- Peptides
- THIOREDOXIN GLUTATHIONE REDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A