SMTL ID : 2xa3.1

crystal structure of the broadly neutralizing llama VHH D7 and its mode of HIV-1 gp120 interaction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.29, S.31, H.32, W.100 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.29, A:S.31, A:S.31 Water bridges: A:S.29 SO4.2: 2 residues within 4Å: Chain A: R.101, P.102 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.101 Salt bridges: A:R.101 SO4.3: 4 residues within 4Å: Chain A: F.37, R.45, S.112, D.113 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.113 Water bridges: A:R.45, A:R.45, A:N.111, A:Y.114 Salt bridges: A:R.45 SO4.4: 2 residues within 4Å: Chain A: Q.119, G.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.122 Water bridges: A:G.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hinz, A. et al., Crystal structure of the neutralizing Llama V(HH) D7 and its mode of HIV-1 gp120 interaction. PLoS ONE (2010)

Release Date

2010-05-26

Peptides

LLAMA HEAVY CHAIN ANTIBODY D7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LLAMA HEAVY CHAIN ANTIBODY D7

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