SMTL ID : 2xad.4 (3 other biounits)

Crystal structure of deacetylase-teicoplanin complex in biosynthesis pathway of teicoplanin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x GHP- 3MY- 3FG- GHP- GHP- OMY- 3FG: TEICOPLANIN(Non-covalent)

GHP-3MY-3FG-GHP-GHP-OMY-3FG.1: 17 residues within 4Å: Chain A: S.98, R.116, Q.117, K.118, L.119, A.120, V.121, G.159, E.160, H.161, P.162, Y.190, F.193 Ligands: BMA.2, NAG.3, GCS.4, T55.5 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:R.116, A:Q.117, A:L.119, A:A.120, A:V.121 Hydrogen bonds: A:R.116, A:Q.117, A:Q.117, A:L.119, A:V.121, A:H.161, A:Y.190 Water bridges: A:V.121, A:F.193 Halogen bonds: A:S.98

1 x BMA: beta-D-mannopyranose(Non-covalent)

BMA.2: 4 residues within 4Å: Chain A: K.194 Ligands: GHP-3MY-3FG-GHP-GHP-OMY-3FG.1, GHP-3MY-3FG-GHP-GHP-OMY-3FG.1, GHP-3MY-3FG-GHP-GHP-OMY-3FG.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.194, A:K.194

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.3: 5 residues within 4Å: Chain A: I.62, R.116, K.118 Ligands: GHP-3MY-3FG-GHP-GHP-OMY-3FG.1, GHP-3MY-3FG-GHP-GHP-OMY-3FG.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.116

1 x GCS: 2-amino-2-deoxy-beta-D-glucopyranose(Non-covalent)

GCS.4: 12 residues within 4Å: Chain A: H.16, W.63, R.75, D.97, S.98, I.99, H.161, D.163 Ligands: GHP-3MY-3FG-GHP-GHP-OMY-3FG.1, GHP-3MY-3FG-GHP-GHP-OMY-3FG.1, GHP-3MY-3FG-GHP-GHP-OMY-3FG.1, T55.5 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.75, A:R.75, A:S.98, A:S.98 Water bridges: A:H.16, A:D.18, A:D.18, A:D.97, A:Q.232, A:Q.232

1 x T55: 8-METHYLNONANOIC ACID(Non-covalent)

T55.5: 10 residues within 4Å: Chain A: D.18, L.22, P.189, Y.190, V.226, Q.232, M.233 Ligands: GHP-3MY-3FG-GHP-GHP-OMY-3FG.1, GHP-3MY-3FG-GHP-GHP-OMY-3FG.1, GCS.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.22, A:P.189, A:V.226, A:Q.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chan, H.C. et al., Regioselective Deacetylation Based on Teicoplanin-Complexed Orf2 Crystal Structures. Mol.Biosyst. (2011)

Release Date

2011-03-02

Peptides

N-ACYL GLM PEUDO-TEICOPLANIN DEACETYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

N-ACYL GLM PEUDO-TEICOPLANIN DEACETYLASE

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