SMTL ID : 2xc1.1

Full-length Tailspike Protein Mutant Y108W of Bacteriophage P22

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-trimer

Ligands

13 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: S.568, K.569, T.570, L.571 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.569, A:T.570, A:T.570 GOL.2: 4 residues within 4Å: Chain A: H.468, E.469, G.494, A.495 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.468, A:E.469, A:E.469, A:A.495 GOL.3: 4 residues within 4Å: Chain A: H.420, L.466, H.468, S.493 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.466, A:S.493 GOL.7: 6 residues within 4Å: Chain B: L.406, D.407, R.408, P.413, I.414, T.415 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.406, B:R.408, B:I.414, B:T.415 Water bridges: B:T.415 GOL.8: 6 residues within 4Å: Chain A: V.164, K.186, G.187 Chain B: K.170, A.171, F.194 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.170 Water bridges: B:A.171, B:A.171, B:K.172, B:G.192, B:V.193 GOL.9: 3 residues within 4Å: Chain B: N.425 Chain C: D.210, Q.212 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:Q.212, B:N.425 Water bridges: C:N.211, B:N.425, B:N.425 GOL.10: 5 residues within 4Å: Chain B: L.419, H.420, L.466, H.468, S.493 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.468, B:S.493 Water bridges: B:L.419, B:H.420, B:H.468 GOL.13: 6 residues within 4Å: Chain C: L.406, D.407, R.408, P.413, I.414, T.415 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.408, C:I.414, C:T.415 GOL.14: 3 residues within 4Å: Chain C: K.653, N.655, E.657 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.653 GOL.15: 3 residues within 4Å: Chain C: T.235, V.236, K.302 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.236, C:K.302 GOL.16: 5 residues within 4Å: Chain C: P.131, R.148, D.149, Y.150, N.151 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:R.148, C:R.148, C:D.149, C:N.151, C:N.151 Water bridges: C:Y.150 GOL.17: 5 residues within 4Å: Chain A: N.547 Chain C: Y.555, S.557, A.558, Y.577 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.552, C:S.557, C:S.557 GOL.18: 4 residues within 4Å: Chain C: T.307, E.309, L.337, W.365 1 PLIP interactions: 1 interactions with chain C Water bridges: C:Q.335

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 3 residues within 4Å: Chain A: L.663 Chain B: L.663 Chain C: L.663 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: B:L.663, A:L.663, C:L.663, H2O.30, H2O.58, H2O.87

4 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.5: 6 residues within 4Å: Chain A: W.315, N.340, Y.377, N.378, D.411, Y.412 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.340 Water bridges: A:F.343, A:N.425 PE4.6: 7 residues within 4Å: Chain A: R.20, Q.98, V.99, D.100, Y.101 Chain B: R.13, L.78 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:R.13, B:L.78, A:R.20 PE4.11: 6 residues within 4Å: Chain B: W.315, N.340, Y.377, N.378, D.411, Y.412 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.340, B:N.378 Water bridges: B:N.340 PE4.19: 7 residues within 4Å: Chain C: N.340, G.342, F.343, Y.377, N.378, D.411, Y.412 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.340, C:N.378 Water bridges: C:F.343

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.12: 1 residues within 4Å: Chain B: K.228 4 PLIP interactions: 4 interactions with chain B Water bridges: B:T.198, B:T.200, B:T.200 Salt bridges: B:K.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seul, A. et al., Bacteriophage P22 Tailspike: Structure of the Complete Protein and Function of the Interdomain Linker. Acta Crystallogr.,Sect.D (2014)

Release Date

2011-05-04

Peptides

BIFUNCTIONAL TAIL PROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

BIFUNCTIONAL TAIL PROTEIN