SMTL ID : 2xc3.1

X-ray structure of Mycobacterium tuberculosis cyp125 bound to the reverse type I inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 29 residues within 4Å: Chain A: M.107, L.108, H.115, R.119, F.126, M.255, L.256, A.259, G.260, T.263, T.264, S.267, V.298, P.303, F.307, R.309, Y.332, G.359, F.360, G.361, G.362, A.365, H.366, Y.367, C.368, I.369, G.370, L.373, A.374 20 PLIP interactions: 19 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:L.108, A:F.126, A:A.259, A:V.298, A:P.303, A:F.307, A:Y.332, A:F.360, A:I.369, A:L.373 Hydrogen bonds: A:Y.332, A:G.362 Water bridges: A:G.362 Salt bridges: A:H.115, A:R.119, A:R.309, A:H.366 pi-Stacking: A:F.360 Metal complexes: A:C.368, H2O.16

1 x RT8: NALPHA-[(TRANS-4-METHYLCYCLOHEXYL)CARBONYL]-N-PYRIDIN-4-YL-D-TRYPTOPHANAMIDE(Non-covalent)

RT8.2: 17 residues within 4Å: Chain A: I.88, F.91, D.99, V.102, Q.103, V.106, L.108, M.191, T.192, K.205, I.212, F.251, V.254, V.258, A.259, F.307, W.405 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.102, A:V.106, A:L.108, A:K.205, A:I.212, A:F.251, A:V.254, A:V.258 Hydrogen bonds: A:D.99 Water bridges: A:Q.103, A:Q.103, A:M.191 pi-Stacking: A:W.405

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ouellet, H. et al., Reverse Type I Inhibitor of Mycobacteriumtuberculosis Cyp125A1. Bioorg.Med.Chem.Lett. (2011)

Release Date

2010-11-10

Peptides

PUTATIVE CYTOCHROME P450 125: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PUTATIVE CYTOCHROME P450 125