SMTL ID : 2xcj.1

Crystal structure of P2 C, the immunity repressor of temperate E. coli phage P2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: Y.17, L.18, Q.22 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.19, A:Q.22, A:Q.22 NA.5: 3 residues within 4Å: Chain B: Y.17, L.18, Q.22 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.17, B:S.19, B:Q.22

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain B: S.35, Y.36, S.39, R.41 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.39, B:S.39, B:R.41 Water bridges: B:S.35, B:S.35, B:S.35, B:R.41 GOL.3: 5 residues within 4Å: Chain B: T.27, G.28, V.29, V.48, N.51 No protein-ligand interaction detected (PLIP)

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 1 residues within 4Å: Chain B: R.41 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.41, B:R.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Massad, T. et al., Crystal Structure of the P2 C-Repressor: A Binder of Non-Palindromic Direct DNA Repeats. Nucleic Acids Res. (2010)

Release Date

2010-07-28

Peptides

C PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C PROTEIN

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