SMTL ID : 2xcs.1

The 2.1A crystal structure of S. aureus Gyrase complex with GSK299423 and DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.1: 4 residues within 4Å: Chain A: Y.523, K.524, T.526, Q.529 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.523, A:T.526, A:Q.529, H2O.15, H2O.15 MN.2: 4 residues within 4Å: Chain A: E.27, D.100 Chain C: G.8, G.9 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.27, A:D.100, H2O.15, H2O.15 MN.3: 4 residues within 4Å: Chain B: E.27, D.100 Chain D: G.8, G.9 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.27, B:D.100, H2O.29, H2O.29 MN.4: 1 residues within 4Å: Chain C: X.1 No protein-ligand interaction detected (PLIP)

1 x RXV: 6-METHOXY-4-(2-{4-[([1,3]OXATHIOLO[5,4-C]PYRIDIN-6-YLMETHYL)AMINO]PIPERIDIN-1-YL}ETHYL)QUINOLINE-3-CARBONITRILE(Non-covalent)

RXV.5: 13 residues within 4Å: Chain A: A.269, G.273, M.276, D.284, M.322 Chain B: A.269, G.273, D.284, M.322 Chain C: G.10, C.11 Chain D: G.10, C.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bax, B.D. et al., Type Iia Topoisomerase Inhibition by a New Class of Antibacterial Agents. Nature (2010)

Release Date

2010-08-04

Peptides

DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

DNA GYRASE SUBUNIT B, DNA GYRASE SUBUNIT A

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