SMTL ID : 2xcu.6 (5 other biounits)

Membrane-embedded monofunctional glycosyltransferase WaaA of Aquifex aeolicus, complex with CMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

monomer

Ligands

1 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

C5P.1: 12 residues within 4Å: Chain A: S.203, V.231, P.232, R.233, F.268, G.269, I.270, L.271, K.272, H.293, N.294, E.297 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:P.232, A:G.269, A:I.270, A:L.271, A:K.272, A:N.294, A:N.294, A:E.297 Water bridges: A:S.203, A:H.293, A:E.297 Salt bridges: A:R.233, A:H.293 pi-Stacking: A:F.268

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 5 residues within 4Å: Chain A: R.120, E.121, F.122, W.123, I.146 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.120, A:F.122

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 6 residues within 4Å: Chain A: M.22, Q.23, F.24, E.25, V.26, L.27 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.24, A:E.25, A:E.25, A:L.27, A:K.28

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 4 residues within 4Å: Chain A: F.30, F.31, F.101, R.105 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmidt, H. et al., Structural and Mechanistic Analysis of the Membrane-Embedded Glycosyltransferase Waaa Required for Lipopolysaccharide Synthesis. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2011-05-11

Peptides

3-DEOXY-D-MANNO-2-OCTULOSONIC ACID TRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

3-DEOXY-D-MANNO-2-OCTULOSONIC ACID TRANSFERASE

Related Entries With Identical Sequence