- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x DG2: (2R)-2,3-diphosphoglyceric acid(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 9 residues within 4Å:- Chain A: F.301, D.302, L.303, I.304, Q.340, H.341, G.342, I.343, Y.345
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:I.304, A:G.342
- Water bridges: A:Q.298, A:F.301, A:G.342
GOL.6: 9 residues within 4Å:- Chain B: F.301, D.302, L.303, I.304, Q.340, H.341, G.342, I.343, Y.345
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:I.304, B:G.342
- Water bridges: B:Q.298, B:F.301, B:G.342
GOL.10: 9 residues within 4Å:- Chain C: F.301, D.302, L.303, I.304, Q.340, H.341, G.342, I.343, Y.345
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:I.304, C:G.342
- Water bridges: C:Q.298, C:F.301, C:G.342
GOL.14: 9 residues within 4Å:- Chain D: F.301, D.302, L.303, I.304, Q.340, H.341, G.342, I.343, Y.345
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:I.304, D:G.342
- Water bridges: D:Q.298, D:F.301, D:G.342
- 4 x IMP: INOSINIC ACID(Non-covalent)
IMP.3: 15 residues within 4Å:- Chain A: N.70, M.71, D.72, F.175, R.220, V.223, D.224, H.227, Y.228, K.233, T.267, N.268, S.269, K.310
- Ligands: MG.4
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:N.70, A:N.70, A:M.71, A:D.72, A:D.72, A:R.220, A:R.220, A:D.224, A:K.233, A:K.233, A:N.268, A:S.269
- Water bridges: A:N.176, A:N.268, A:K.310, A:K.310
- Salt bridges: A:K.310
- pi-Stacking: A:F.175, A:H.227, A:H.227
IMP.7: 15 residues within 4Å:- Chain B: N.70, M.71, D.72, F.175, R.220, V.223, D.224, H.227, Y.228, K.233, T.267, N.268, S.269, K.310
- Ligands: MG.8
21 PLIP interactions:21 interactions with chain B- Hydrogen bonds: B:N.70, B:N.70, B:M.71, B:D.72, B:R.220, B:R.220, B:D.224, B:D.224, B:K.233, B:K.233, B:T.267, B:N.268, B:S.269
- Water bridges: B:N.176, B:N.268, B:K.310, B:K.310
- Salt bridges: B:K.310
- pi-Stacking: B:F.175, B:H.227, B:H.227
IMP.11: 15 residues within 4Å:- Chain C: N.70, M.71, D.72, F.175, R.220, V.223, D.224, H.227, Y.228, K.233, T.267, N.268, S.269, K.310
- Ligands: MG.12
21 PLIP interactions:21 interactions with chain C- Hydrogen bonds: C:N.70, C:N.70, C:M.71, C:D.72, C:R.220, C:R.220, C:D.224, C:D.224, C:K.233, C:K.233, C:T.267, C:N.268, C:S.269
- Water bridges: C:N.176, C:N.268, C:K.310, C:K.310
- Salt bridges: C:K.310
- pi-Stacking: C:F.175, C:H.227, C:H.227
IMP.15: 15 residues within 4Å:- Chain D: N.70, M.71, D.72, F.175, R.220, V.223, D.224, H.227, Y.228, K.233, T.267, N.268, S.269, K.310
- Ligands: MG.16
21 PLIP interactions:21 interactions with chain D- Hydrogen bonds: D:N.70, D:N.70, D:N.70, D:M.71, D:D.72, D:D.72, D:R.220, D:R.220, D:D.224, D:K.233, D:K.233, D:N.268, D:S.269
- Water bridges: D:N.176, D:N.268, D:K.310, D:K.310
- Salt bridges: D:K.310
- pi-Stacking: D:F.175, D:H.227, D:H.227
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 4 residues within 4Å:- Chain A: N.70, D.72, D.369
- Ligands: IMP.3
5 PLIP interactions:2 interactions with chain A, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Metal complexes: A:D.72, A:D.369, IMP.3, H2O.9, H2O.9
MG.8: 4 residues within 4Å:- Chain B: N.70, D.72, D.369
- Ligands: IMP.7
5 PLIP interactions:2 interactions with chain B, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Metal complexes: B:D.72, B:D.369, IMP.7, H2O.19, H2O.19
MG.12: 4 residues within 4Å:- Chain C: N.70, D.72, D.369
- Ligands: IMP.11
5 PLIP interactions:2 interactions with chain C, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Metal complexes: C:D.72, C:D.369, IMP.11, H2O.29, H2O.29
MG.16: 4 residues within 4Å:- Chain D: N.70, D.72, D.369
- Ligands: IMP.15
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.72, D:D.369, H2O.39, H2O.39
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wallden, K. et al., Structural Basis for the Allosteric Regulation and Substrate Recognition of Human Cytosolic 5'-Nucleotidase II. J.Mol.Biol. (2011)
- Release Date
- 2011-03-16
- Peptides
- CYTOSOLIC PURINE 5'-NUCLEOTIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x DG2: (2R)-2,3-diphosphoglyceric acid(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wallden, K. et al., Structural Basis for the Allosteric Regulation and Substrate Recognition of Human Cytosolic 5'-Nucleotidase II. J.Mol.Biol. (2011)
- Release Date
- 2011-03-16
- Peptides
- CYTOSOLIC PURINE 5'-NUCLEOTIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A