- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x IMP: INOSINIC ACID(Non-covalent)
IMP.2: 15 residues within 4Å:- Chain A: N.70, M.71, D.72, F.175, R.220, V.223, D.224, H.227, Y.228, K.233, T.267, N.268, S.269, K.310
- Ligands: MG.10
22 PLIP interactions:22 interactions with chain A- Hydrogen bonds: A:N.70, A:N.70, A:M.71, A:D.72, A:R.220, A:R.220, A:D.224, A:K.233, A:K.233, A:N.268, A:S.269, A:S.269
- Water bridges: A:N.176, A:Y.228, A:N.268, A:N.268, A:K.310, A:K.310
- Salt bridges: A:K.310
- pi-Stacking: A:F.175, A:H.227, A:H.227
IMP.12: 15 residues within 4Å:- Chain B: N.70, M.71, D.72, F.175, R.220, V.223, D.224, H.227, Y.228, K.233, T.267, N.268, S.269, K.310
- Ligands: MG.20
24 PLIP interactions:24 interactions with chain B- Hydrogen bonds: B:N.70, B:N.70, B:M.71, B:D.72, B:R.220, B:R.220, B:D.224, B:D.224, B:K.233, B:K.233, B:T.267, B:N.268, B:S.269, B:S.269
- Water bridges: B:Y.83, B:N.176, B:N.268, B:N.268, B:K.310, B:K.310
- Salt bridges: B:K.310
- pi-Stacking: B:F.175, B:H.227, B:H.227
IMP.22: 15 residues within 4Å:- Chain C: N.70, M.71, D.72, F.175, R.220, V.223, D.224, H.227, Y.228, K.233, T.267, N.268, S.269, K.310
- Ligands: MG.30
24 PLIP interactions:24 interactions with chain C- Hydrogen bonds: C:N.70, C:N.70, C:M.71, C:D.72, C:R.220, C:R.220, C:D.224, C:D.224, C:K.233, C:K.233, C:T.267, C:N.268, C:S.269, C:S.269
- Water bridges: C:Y.83, C:N.176, C:N.268, C:N.268, C:K.310, C:K.310
- Salt bridges: C:K.310
- pi-Stacking: C:F.175, C:H.227, C:H.227
IMP.32: 15 residues within 4Å:- Chain D: N.70, M.71, D.72, F.175, R.220, V.223, D.224, H.227, Y.228, K.233, T.267, N.268, S.269, K.310
- Ligands: MG.40
23 PLIP interactions:23 interactions with chain D- Hydrogen bonds: D:N.70, D:N.70, D:N.70, D:M.71, D:D.72, D:R.220, D:R.220, D:D.224, D:K.233, D:K.233, D:N.268, D:S.269, D:S.269
- Water bridges: D:N.176, D:Y.228, D:N.268, D:N.268, D:K.310, D:K.310
- Salt bridges: D:K.310
- pi-Stacking: D:F.175, D:H.227, D:H.227
- 24 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 8 residues within 4Å:- Chain A: F.301, D.302, I.304, L.339, Q.340, H.341, G.342, I.343
Ligand excluded by PLIPGOL.4: 5 residues within 4Å:- Chain A: Y.169, F.216, Q.217, R.220, D.224
Ligand excluded by PLIPGOL.5: 6 residues within 4Å:- Chain A: P.114, T.115, E.392, E.396, Y.452, L.458
Ligand excluded by PLIPGOL.6: 5 residues within 4Å:- Chain A: D.275, T.279, P.296, W.297, Q.298
Ligand excluded by PLIPGOL.7: 7 residues within 4Å:- Chain A: Y.169, I.170, L.171, N.172, N.176, H.370
- Ligands: ATP.1
Ligand excluded by PLIPGOL.8: 7 residues within 4Å:- Chain A: D.270, Y.271, V.306, D.307, G.328, K.329, L.330
Ligand excluded by PLIPGOL.13: 8 residues within 4Å:- Chain B: F.301, D.302, I.304, L.339, Q.340, H.341, G.342, I.343
Ligand excluded by PLIPGOL.14: 5 residues within 4Å:- Chain B: Y.169, F.216, Q.217, R.220, D.224
Ligand excluded by PLIPGOL.15: 6 residues within 4Å:- Chain B: P.114, T.115, E.392, E.396, Y.452, L.458
Ligand excluded by PLIPGOL.16: 5 residues within 4Å:- Chain B: D.275, T.279, P.296, W.297, Q.298
Ligand excluded by PLIPGOL.17: 7 residues within 4Å:- Chain B: Y.169, I.170, L.171, N.172, N.176, H.370
- Ligands: ATP.11
Ligand excluded by PLIPGOL.18: 7 residues within 4Å:- Chain B: D.270, Y.271, V.306, D.307, G.328, K.329, L.330
Ligand excluded by PLIPGOL.23: 8 residues within 4Å:- Chain C: F.301, D.302, I.304, L.339, Q.340, H.341, G.342, I.343
Ligand excluded by PLIPGOL.24: 5 residues within 4Å:- Chain C: Y.169, F.216, Q.217, R.220, D.224
Ligand excluded by PLIPGOL.25: 6 residues within 4Å:- Chain C: P.114, T.115, E.392, E.396, Y.452, L.458
Ligand excluded by PLIPGOL.26: 5 residues within 4Å:- Chain C: D.275, T.279, P.296, W.297, Q.298
Ligand excluded by PLIPGOL.27: 7 residues within 4Å:- Chain C: Y.169, I.170, L.171, N.172, N.176, H.370
- Ligands: ATP.21
Ligand excluded by PLIPGOL.28: 7 residues within 4Å:- Chain C: D.270, Y.271, V.306, D.307, G.328, K.329, L.330
Ligand excluded by PLIPGOL.33: 8 residues within 4Å:- Chain D: F.301, D.302, I.304, L.339, Q.340, H.341, G.342, I.343
Ligand excluded by PLIPGOL.34: 5 residues within 4Å:- Chain D: Y.169, F.216, Q.217, R.220, D.224
Ligand excluded by PLIPGOL.35: 6 residues within 4Å:- Chain D: P.114, T.115, E.392, E.396, Y.452, L.458
Ligand excluded by PLIPGOL.36: 5 residues within 4Å:- Chain D: D.275, T.279, P.296, W.297, Q.298
Ligand excluded by PLIPGOL.37: 7 residues within 4Å:- Chain D: Y.169, I.170, L.171, N.172, N.176, H.370
- Ligands: ATP.31
Ligand excluded by PLIPGOL.38: 7 residues within 4Å:- Chain D: D.270, Y.271, V.306, D.307, G.328, K.329, L.330
Ligand excluded by PLIP- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.9: 4 residues within 4Å:- Chain C: K.380
- Ligands: ATP.1, ATP.21, MG.29
No protein-ligand interaction detected (PLIP)MG.10: 4 residues within 4Å:- Chain A: N.70, D.72, D.369
- Ligands: IMP.2
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.72, A:D.369, H2O.13, H2O.13
MG.19: 4 residues within 4Å:- Chain D: K.380
- Ligands: ATP.11, ATP.31, MG.39
No protein-ligand interaction detected (PLIP)MG.20: 4 residues within 4Å:- Chain B: N.70, D.72, D.369
- Ligands: IMP.12
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.72, B:D.369, H2O.29, H2O.29
MG.29: 4 residues within 4Å:- Chain A: K.380
- Ligands: ATP.1, MG.9, ATP.21
No protein-ligand interaction detected (PLIP)MG.30: 4 residues within 4Å:- Chain C: N.70, D.72, D.369
- Ligands: IMP.22
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.72, C:D.369, H2O.45, H2O.45
MG.39: 4 residues within 4Å:- Chain B: K.380
- Ligands: ATP.11, MG.19, ATP.31
No protein-ligand interaction detected (PLIP)MG.40: 4 residues within 4Å:- Chain D: N.70, D.72, D.369
- Ligands: IMP.32
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.72, D:D.369, H2O.60, H2O.60
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wallden, K. et al., Structural Basis for the Allosteric Regulation and Substrate Recognition of Human Cytosolic 5'-Nucleotidase II. J.Mol.Biol. (2011)
- Release Date
- 2011-03-16
- Peptides
- CYTOSOLIC PURINE 5'-NUCLEOTIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 24 x GOL: GLYCEROL(Non-functional Binders)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wallden, K. et al., Structural Basis for the Allosteric Regulation and Substrate Recognition of Human Cytosolic 5'-Nucleotidase II. J.Mol.Biol. (2011)
- Release Date
- 2011-03-16
- Peptides
- CYTOSOLIC PURINE 5'-NUCLEOTIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A