SMTL ID : 2xdb.1

A processed non-coding RNA regulates a bacterial antiviral system

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: I.93, E.94, R.158 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.94, A:E.94 Salt bridges: A:R.158 SO4.2: 2 residues within 4Å: Chain A: M.1, K.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.1, A:M.1 Salt bridges: A:K.2 SO4.3: 3 residues within 4Å: Chain A: E.41, I.42, Q.43 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.43 Water bridges: A:G.44 SO4.6: 3 residues within 4Å: Chain B: U.13, G.30, C.31 No protein-ligand interaction detected (PLIP)

6 x CO: COBALT (II) ION(Non-covalent)(Non-functional Binders)

CO.4: 2 residues within 4Å: Chain A: H.72, G.75 No protein-ligand interaction detected (PLIP) CO.5: 4 residues within 4Å: Chain A: E.73, N.74, K.116, Q.119 No protein-ligand interaction detected (PLIP) CO.7: 3 residues within 4Å: Chain B: A.17, C.18, U.26 No protein-ligand interaction detected (PLIP) CO.8: 2 residues within 4Å: Chain B: U.20, U.22 No protein-ligand interaction detected (PLIP) CO.9: 1 residues within 4Å: Chain B: G.6 No protein-ligand interaction detected (PLIP) CO.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blower, T.R. et al., A Processed Noncoding RNA Regulates an Altruistic Bacterial Antiviral System. Nat.Struct.Mol.Biol. (2011)

Release Date

2011-01-12

Peptides

TOXN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TOXN

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