SMTL ID : 2xeu.1

Ring domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 7 residues within 4Å: Chain A: Y.13, V.17, R.21, L.22, I.62, Y.63, I.64 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.13, A:R.21, A:I.62, A:I.64 Water bridges: A:G.1, A:G.1 GLC-FRU.6: 7 residues within 4Å: Chain B: Y.13, V.17, R.21, L.22, I.62, Y.63, I.64 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Y.13, B:R.21, B:I.62, B:I.64, B:I.64 Water bridges: B:G.1, B:G.1

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.6, C.9, R.21, C.33, C.36 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.6, A:C.9, A:C.33, A:C.36 ZN.3: 5 residues within 4Å: Chain A: T.26, C.28, H.30, C.47, C.50 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.28, A:H.30, A:C.47, A:C.50 ZN.7: 5 residues within 4Å: Chain B: C.6, C.9, R.21, C.33, C.36 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.6, B:C.9, B:C.33, B:C.36 ZN.8: 5 residues within 4Å: Chain B: T.26, C.28, H.30, C.47, C.50 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.28, B:H.30, B:C.47, B:C.50

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: R.38, N.55, H.56, K.57, Y.59 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.38, A:H.56, A:K.57 Salt bridges: A:K.57 SO4.5: 2 residues within 4Å: Chain A: N.45, K.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.45 Salt bridges: A:K.53 SO4.9: 5 residues within 4Å: Chain B: R.38, N.55, H.56, K.57, Y.59 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.38, B:H.56, B:K.57, B:Y.59 Salt bridges: B:K.57 SO4.10: 2 residues within 4Å: Chain B: N.45, K.53 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.45 Salt bridges: B:K.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plechanovova, A. et al., Mechanism of Ubiquitylation by Dimeric Ring Ligase Rnf4. Nat.Struct.Mol.Biol. (2011)

Release Date

2010-07-28

Peptides

RING FINGER PROTEIN 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

RING FINGER PROTEIN 4