SMTL ID : 2xf8.4 (3 other biounits)

Structure of the D-Erythrose-4-Phosphate Dehydrogenase from E. coli in complex with a NAD cofactor analog (3-Chloroacetyl adenine pyridine dinucleotide) and sulfate anion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: T.155, H.181, T.212, K.213, L.214 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.155, A:T.212, A:K.213, A:L.214 Salt bridges: A:H.181 SO4.3: 5 residues within 4Å: Chain B: T.155, H.181, T.212, K.213, L.214 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.155, B:T.212, B:K.213, B:L.214 Salt bridges: B:H.181 SO4.4: 5 residues within 4Å: Chain C: T.155, H.181, T.212, K.213, L.214 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:S.153, C:T.155, C:T.212, C:T.212, C:K.213 Salt bridges: C:H.181 SO4.6: 6 residues within 4Å: Chain D: S.153, T.155, H.181, T.212, K.213, L.214 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.153, D:T.155, D:T.212, D:K.213 Salt bridges: D:H.181

2 x 3CD: 3-(CHLOROACETYL) PYRIDINE ADENINE DINUCLEOTIDE(Covalent)

3CD.2: 20 residues within 4Å: Chain A: G.8, F.9, G.10, R.11, I.12, N.35, E.36, L.37, E.79, R.80, C.98, T.99, G.100, Y.102, S.122, H.123, S.153, C.154, N.317, F.321 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.12 Hydrogen bonds: A:F.9, A:R.11, A:I.12, A:N.35, A:L.37, A:R.80, A:G.100, A:C.154 3CD.5: 18 residues within 4Å: Chain C: N.7, G.8, F.9, G.10, R.11, I.12, N.35, E.36, L.37, C.98, T.99, G.100, V.101, Y.102, S.122, S.153, C.154, F.321 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:I.12 Hydrogen bonds: C:F.9, C:F.9, C:R.11, C:I.12, C:N.35, C:L.37, C:G.100, C:Y.102, C:C.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moniot, S. et al., Structural Characterization of Erythrose-4- Phosphate Dehydrogenase from Escherichia Coli: Peculiar Features When Compared to Phosphorylating Gapdhs. To be Published

Release Date

2011-06-08

Peptides

D-ERYTHROSE-4-PHOSPHATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
K

D
L

D-ERYTHROSE-4-PHOSPHATE DEHYDROGENASE

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