SMTL ID : 2xfu.1

Human monoamine oxidase B with tranylcypromine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x FA8: [[(2R,3S,4S)-5-[(4AS)-7,8-DIMETHYL-2,4-DIOXO-4A,5-DIHYDROBENZO[G]PTERIDIN-10-YL]-2,3,4-TRIHYDROXY-PENTOXY]-HYDROXY-PHOSPHORYL] [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL HYDROGEN PHOSPHATE(Covalent)

FA8.1: 37 residues within 4Å: Chain A: V.9, G.10, G.11, G.12, I.13, S.14, L.32, E.33, A.34, R.35, G.39, G.40, R.41, T.42, L.55, G.56, G.57, S.58, Y.59, R.232, P.233, V.234, A.262, I.263, P.264, L.267, W.387, Y.392, C.396, Y.397, G.424, T.425, G.433, Y.434, M.435, A.438 Ligands: 3PL.2 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:W.387, A:Y.397, A:Y.397 Hydrogen bonds: A:G.10, A:G.11, A:G.12, A:S.14, A:S.14, A:S.14, A:A.34, A:R.35, A:R.41, A:G.57, A:S.58, A:Y.59, A:Y.59, A:V.234, A:V.234, A:T.425, A:T.425, A:G.433, A:M.435 Water bridges: A:I.13, A:I.13, A:G.15, A:E.33, A:E.33, A:R.41, A:R.41, A:G.56, A:Q.64, A:E.436 Salt bridges: A:R.41, A:R.41 pi-Stacking: A:Y.392 FA8.3: 37 residues within 4Å: Chain B: V.9, G.10, G.11, G.12, I.13, S.14, L.32, E.33, A.34, R.35, G.39, G.40, R.41, T.42, L.55, G.56, G.57, S.58, Y.59, R.232, P.233, V.234, A.262, I.263, P.264, L.267, W.387, Y.392, C.396, Y.397, G.424, T.425, G.433, Y.434, M.435, A.438 Ligands: 3PL.4 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:W.387, B:Y.397, B:Y.397 Hydrogen bonds: B:G.11, B:G.12, B:S.14, B:A.34, B:R.35, B:R.41, B:G.57, B:S.58, B:Y.59, B:Y.59, B:V.234, B:V.234, B:T.425, B:G.433, B:M.435 Water bridges: B:I.13, B:I.13, B:G.15, B:E.33, B:E.33, B:R.41, B:R.41, B:Q.64, B:E.436 Salt bridges: B:R.41, B:R.41 pi-Stacking: B:Y.392

2 x 3PL: 3-PHENYLPROPANAL(Non-covalent)

3PL.2: 8 residues within 4Å: Chain A: C.171, Y.187, Q.205, F.342, Y.397, G.433, Y.434 Ligands: FA8.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.205, A:F.342, A:Y.397 pi-Stacking: A:Y.397 3PL.4: 9 residues within 4Å: Chain B: Y.59, C.171, Y.187, Q.205, F.342, Y.397, G.433, Y.434 Ligands: FA8.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.59, B:Q.205, B:F.342, B:Y.397 pi-Stacking: B:Y.397

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonivento, D. et al., Potentiation of ligand binding through cooperative effects in monoamine oxidase B. J. Biol. Chem. (2010)

Release Date

2010-06-09

Peptides

Amine oxidase [flavin-containing] B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Amine oxidase [flavin-containing] B

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