SMTL ID : 2xfu.1

Human monoamine oxidase B with tranylcypromine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x FA8: [[(2R,3S,4S)-5-[(4AS)-7,8-DIMETHYL-2,4-DIOXO-4A,5-DIHYDROBENZO[G]PTERIDIN-10-YL]-2,3,4-TRIHYDROXY-PENTOXY]-HYDROXY-PHOSPHORYL] [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL HYDROGEN PHOSPHATE(Covalent)

FA8.1: 37 residues within 4Å: Chain A: V.9, G.10, G.11, G.12, I.13, S.14, L.32, E.33, A.34, R.35, G.39, G.40, R.41, T.42, L.55, G.56, G.57, S.58, Y.59, R.232, P.233, V.234, A.262, I.263, P.264, L.267, W.387, Y.392, C.396, Y.397, G.424, T.425, G.433, Y.434, M.435, A.438 Ligands: 3PL.2 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:W.387, A:Y.397, A:Y.397 Hydrogen bonds: A:G.10, A:G.11, A:G.12, A:S.14, A:S.14, A:S.14, A:A.34, A:R.35, A:G.39, A:R.41, A:G.57, A:S.58, A:Y.59, A:Y.59, A:V.234, A:V.234, A:T.425, A:T.425, A:G.433, A:M.435 Salt bridges: A:R.41, A:R.41 Water bridges: A:I.13, A:I.13, A:G.15, A:E.33, A:E.33, A:R.41, A:R.41, A:Q.64, A:E.436 pi-Stacking: A:Y.392 FA8.3: 37 residues within 4Å: Chain B: V.9, G.10, G.11, G.12, I.13, S.14, L.32, E.33, A.34, R.35, G.39, G.40, R.41, T.42, L.55, G.56, G.57, S.58, Y.59, R.232, P.233, V.234, A.262, I.263, P.264, L.267, W.387, Y.392, C.396, Y.397, G.424, T.425, G.433, Y.434, M.435, A.438 Ligands: 3PL.4 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:W.387, B:Y.397, B:Y.397 Hydrogen bonds: B:G.11, B:G.12, B:S.14, B:A.34, B:R.35, B:G.39, B:R.41, B:G.57, B:S.58, B:Y.59, B:Y.59, B:V.234, B:V.234, B:T.425, B:G.433, B:M.435 Salt bridges: B:R.41, B:R.41 Water bridges: B:I.13, B:I.13, B:G.15, B:E.33, B:E.33, B:R.41, B:R.41, B:E.436 pi-Stacking: B:Y.392

2 x 3PL: 3-PHENYLPROPANAL(Non-covalent)

3PL.2: 8 residues within 4Å: Chain A: C.171, Y.187, Q.205, F.342, Y.397, G.433, Y.434 Ligands: FA8.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.205, A:F.342, A:Y.397 pi-Stacking: A:Y.397 3PL.4: 9 residues within 4Å: Chain B: Y.59, C.171, Y.187, Q.205, F.342, Y.397, G.433, Y.434 Ligands: FA8.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.59, B:Q.205, B:F.342, B:Y.397 pi-Stacking: B:Y.397

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Bonivento, D. et al., Potentiation of ligand binding through cooperative effects in monoamine oxidase B. J. Biol. Chem. (2010)

Release Date

2010-06-09

Peptides

Amine oxidase [flavin-containing] B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Amine oxidase [flavin-containing] B