SMTL ID : 2xhu.1 (1 other biounit)

HCV-J4 NS5B Polymerase Orthorhombic Crystal Form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.142, Q.447, S.557, G.558 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.447, A:G.558 Water bridges: A:G.558, A:G.559 Salt bridges: A:K.142 SO4.2: 3 residues within 4Å: Chain A: R.49, R.159, C.224 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.49, A:C.224, A:F.225 Salt bridges: A:R.49, A:R.159 SO4.3: 4 residues within 4Å: Chain A: S.368, R.387, T.391, R.395 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.368 Salt bridges: A:R.387, A:R.395 SO4.4: 1 residues within 4Å: Chain A: R.115 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.115 Salt bridges: A:R.115 SO4.5: 3 residues within 4Å: Chain A: S.85, I.86, R.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.86 Water bridges: A:E.87 Salt bridges: A:R.121 SO4.6: 3 residues within 4Å: Chain A: L.458, G.517, R.518 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.518 Salt bridges: A:R.518 SO4.7: 2 residues within 4Å: Chain A: R.44, R.155 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.155 Salt bridges: A:R.44 SO4.8: 3 residues within 4Å: Chain A: V.531, R.532, T.533 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.532, A:T.533

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harrus, D. et al., Further Insights Into the Roles of GTP and the C- Terminus of the Hepatitis C Virus Polymerase in the Initiation of RNA Synthesis. J.Biol.Chem. (2010)

Release Date

2010-08-04

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

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