SMTL ID : 2xi2.1 (2 other biounits)

HCV-H77 NS5B Apo Polymerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.48, K.51, T.221, R.222, C.223 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:C.223 Water bridges: A:K.51, A:F.224, A:F.224 Salt bridges: A:R.48, A:K.51 SO4.2: 4 residues within 4Å: Chain A: R.505, V.530, R.531, T.532 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.531, A:T.532, A:T.532, A:T.532 Salt bridges: A:R.505 SO4.3: 3 residues within 4Å: Chain A: L.457, G.516, R.517 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.517 Water bridges: A:E.440, A:A.518 Salt bridges: A:R.517 SO4.4: 3 residues within 4Å: Chain A: S.367, R.386, T.390 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.367, A:S.367, A:T.390 Salt bridges: A:R.386 SO4.5: 3 residues within 4Å: Chain A: N.24, L.26, R.436 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.24 Salt bridges: A:R.436 SO4.6: 3 residues within 4Å: Chain A: K.209, R.380, Y.382 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.382 Water bridges: A:R.380, A:R.380 Salt bridges: A:K.209, A:R.380 SO4.7: 5 residues within 4Å: Chain A: L.433, D.437, Q.438, L.439, R.514 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.437, A:D.437, A:L.439 Water bridges: A:E.440, A:E.440, A:R.514, A:R.514, A:R.514 Salt bridges: A:R.514

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harrus, D. et al., Further Insights Into the Roles of GTP and the C- Terminus of the Hepatitis C Virus Polymerase in the Initiation of RNA Synthesis. J.Biol.Chem. (2010)

Release Date

2010-08-04

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

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